############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL cn.farms ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘cn.farms’ ... ** using staged installation ** libs using C compiler: ‘gcc (conda-forge gcc 14.2.0-1) 14.2.0’ using C++ compiler: ‘g++ (conda-forge gcc 14.2.0-1) 14.2.0’ gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c R_init_cnfarms.c -o R_init_cnfarms.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c laplace.cpp -o laplace.o laplace.cpp: In function 'SEXPREC* momentsGauss(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': laplace.cpp:442:13: warning: unused variable 'method' [-Wunused-variable] 442 | int method=0; | ^~~~~~ laplace.cpp: In function 'void computeParameters(double, double, double, double, double, double, int&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&)': laplace.cpp:367:16: warning: 'I1left' may be used uninitialized [-Wmaybe-uninitialized] 367 | double leftMoment1=1.0*leftMy*I0left+1.0*leftSigma*I1left; | ^~~~~~~~~~~ laplace.cpp:198:16: note: 'I1left' was declared here 198 | double I1left; | ^~~~~~ laplace.cpp:387:35: warning: 'I1right' may be used uninitialized [-Wmaybe-uninitialized] 387 | absMoment1=(I1right*leftMy+I1left*rightMy+2.0*I1left*I1right*leftSigma)/(I1left-I1right); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ laplace.cpp:199:16: note: 'I1right' was declared here 199 | double I1right; | ^~~~~~~ gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c sparse_farms.c -o sparse_farms.o g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o cn.farms.so R_init_cnfarms.o laplace.o sparse_farms.o -L/home/biocbuild/R/R-4.4.1/lib -lR installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-cn.farms/00new/cn.farms/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cn.farms)