############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data benchdamic ### ############################################################################## ############################################################################## * checking for file ‘benchdamic/DESCRIPTION’ ... OK * preparing ‘benchdamic’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘intro.Rmd’ using rmarkdown 2024-11-08 16:07:33.436 R[96684:1273266] XType: Using static font registry. Quitting from lines 1034-1050 [runSplits] (intro.Rmd) Error: processing vignette 'intro.Rmd' failed with diagnostics: BiocParallel errors 1 remote errors, element index: 1 1 unevaluated and other errors first remote error: Error in value[[3L]](cond): unused argument (phyloseq = phyloseq_obj) --- failed re-building ‘intro.Rmd’ SUMMARY: processing the following file failed: ‘intro.Rmd’ Error: Vignette re-building failed. Execution halted