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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Voyager.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Voyager_1.8.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/Voyager.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Voyager/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Voyager’ version ‘1.8.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Voyager’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.get_tx_df: no visible binding for global variable ‘cell_col’
.get_tx_df: no visible global function definition for ‘getTechTxFields’
.get_tx_df: no visible global function definition for
  ‘gdalParquetAvailable’
.get_tx_df : <anonymous>: no visible global function definition for
  ‘gdalParquetAvailable’
.get_tx_df : <anonymous>: no visible global function definition for
  ‘rowGeometryNames’
.get_tx_df : <anonymous>: no visible global function definition for
  ‘st_is_empty’
.get_tx_df : <anonymous>: no visible global function definition for
  ‘readSelectTx’
.plot_var_sf: no visible binding for global variable ‘gene’
plotTxBin2D: no visible binding for global variable ‘X’
plotTxBin2D: no visible binding for global variable ‘Y’
Undefined global functions or variables:
  X Y cell_col gdalParquetAvailable gene getTechTxFields readSelectTx
  rowGeometryNames st_is_empty
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
calculateMultivariate 68.250  1.112  70.566
calculateBivariate    21.841  0.680  23.930
plotImage             20.504  1.825  18.963
clusterVariograms     14.909  0.345  15.529
ElbowPlot             12.661  1.822  15.714
plotGeometry          10.999  0.418  12.112
moranPlot              8.698  0.305   9.262
plotCellBin2D          8.350  0.406   8.968
calculateUnivariate    7.085  0.440   7.975
plotCorrelogram        6.443  0.209   6.860
plotCrossVariogramMap  5.941  0.266   6.415
plotVariogram          5.882  0.150   6.280
plotCrossVariogram     5.720  0.215   6.145
plotColDataHistogram   5.693  0.220   6.164
plotColDataFreqpoly    5.559  0.250   6.305
plotLocalResult        5.511  0.235   6.110
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/Voyager.Rcheck/00check.log’
for details.