############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TileDBArray ### ############################################################################## ############################################################################## * checking for file ‘TileDBArray/DESCRIPTION’ ... OK * preparing ‘TileDBArray’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ...sh: line 1: 35822 Illegal instruction: 4 '/Library/Frameworks/R.framework/Resources/bin/Rscript' --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)" > '/tmp/RtmpRDaA5b/xshell8495395571b5' 2>&1 ERROR --- re-building ‘userguide.Rmd’ using rmarkdown *** caught illegal operation *** address 0x1135d02f9, cause 'illegal opcode' Traceback: 1: libtiledb_array_open(ctx@ptr, uri, query_type) 2: tiledb_array(sink@path, attrs = sink@attr, query_type = "WRITE") 3: write_block(sink, viewport, block) 4: write_block(sink, viewport, block) 5: FUN(init, viewport, ...) 6: FUN(viewport, init, ...) 7: gridReduce(FUN_WRAPPER, grid, sink, FUN, ..., verbose = verbose) 8: sinkApply(sink, FUN, x, verbose, verbose_read_block, grid = grid, verbose = FALSE) 9: BLOCK_write_to_sink(sink, x) 10: writeTileDBArray(X) 11: eval(expr, envir) 12: eval(expr, envir) 13: withVisible(eval(expr, envir)) 14: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = invokeRestart("eval_error", cnd))}) 15: eval(call) 16: eval(call) 17: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers) 18: doWithOneRestart(return(expr), restart) 19: withOneRestart(expr, restarts[[1L]]) 20: withRestartList(expr, restarts[-nr]) 21: doWithOneRestart(return(expr), restart) 22: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) 23: withRestartList(expr, restarts[-nr]) 24: doWithOneRestart(return(expr), restart) 25: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) 26: withRestartList(expr, restarts) 27: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE, eval_error = function(cnd) { signalCondition(cnd) stop(cnd) }) 28: evaluate::evaluate(...) 29: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)) 30: in_dir(input_dir(), expr) 31: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))) 32: eng_r(options) 33: block_exec(params) 34: call_block(x) 35: process_group(group) 36: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)) 37: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from lines ", loc) }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) 38: process_file(text, output) 39: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 40: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...) 41: vweave_rmarkdown(...) 42: engine$weave(file, quiet = quiet, encoding = enc) 43: doTryCatch(return(expr), name, parentenv, handler) 44: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 45: tryCatchList(expr, classes, parentenv, handlers) 46: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))}) 47: tools::buildVignettes(dir = ".", tangle = TRUE) An irrecoverable exception occurred. R is aborting now ...