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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL SNPRelate
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* installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘SNPRelate’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c ConvToGDS.cpp -o ConvToGDS.o
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c R_SNPRelate.c -o R_SNPRelate.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c SNPRelate.cpp -o SNPRelate.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c ThreadPool.cpp -o ThreadPool.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c dGenGWAS.cpp -o dGenGWAS.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c dVect.cpp -o dVect.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genBeta.cpp -o genBeta.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genEIGMIX.cpp -o genEIGMIX.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genFst.cpp -o genFst.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genHWE.cpp -o genHWE.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genIBD.cpp -o genIBD.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genIBS.cpp -o genIBS.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genKING.cpp -o genKING.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genLD.cpp -o genLD.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genPCA.cpp -o genPCA.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/gdsfmt/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genSlideWin.cpp -o genSlideWin.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o SNPRelate.so ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -lpthread -llapack -L/home/biocbuild/bbs-3.20-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-SNPRelate/00new/SNPRelate/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SNPRelate)