############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL Repitools ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’ * installing *source* package ‘Repitools’ ... ** this is package ‘Repitools’ version ‘1.54.0’ ** using staged installation ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -D R_NO_REMAP -I. -fPIC -g -O2 -Wall -Werror=format-security -c const.c -o const.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -D R_NO_REMAP -I. -fPIC -g -O2 -Wall -Werror=format-security -c hyp2f1.c -o hyp2f1.o hyp2f1.c: In function ‘hyp2f1’: hyp2f1.c:126:8: warning: old-style function definition [-Wold-style-definition] 126 | double hyp2f1( a, b, c, x ) | ^~~~~~ hyp2f1.c: In function ‘hyt2f1’: hyp2f1.c:294:9: warning: old-style function definition [-Wold-style-definition] 294 | double hyt2f1( a, b, c, x, loss ) | ^~~~~~ hyp2f1.c: In function ‘hys2f1’: hyp2f1.c:438:9: warning: old-style function definition [-Wold-style-definition] 438 | double hys2f1( a, b, c, x, loss ) | ^~~~~~ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c mmeansd.cpp -o mmeansd.o mmeansd.cpp: In function ‘SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)’: mmeansd.cpp:33:24: warning: variable ‘is’ set but not used [-Wunused-but-set-variable] 33 | int * x, nval, hs, is, i; | ^~ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -D R_NO_REMAP -I. -fPIC -g -O2 -Wall -Werror=format-security -c mtherr.c -o mtherr.o mtherr.c: In function ‘mtherr’: mtherr.c:77:5: warning: old-style function definition [-Wold-style-definition] 77 | int mtherr( name, code ) | ^~~~~~ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -D R_NO_REMAP -I. -fPIC -g -O2 -Wall -Werror=format-security -c ringo_stuff.c -o ringo_stuff.o ringo_stuff.c:13:24: warning: ‘Ringo_calls’ defined but not used [-Wunused-variable] 13 | static R_CallMethodDef Ringo_calls[] = { | ^~~~~~~~~~~ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o Repitools.so const.o hyp2f1.o mmeansd.o mtherr.o ringo_stuff.o -L/home/biocbuild/R/R/lib -lR installing to /home/biocbuild/R/R-devel_2025-02-19/site-library/00LOCK-Repitools/00new/Repitools/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Repitools)