############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data Pedixplorer ### ############################################################################## ############################################################################## * checking for file ‘Pedixplorer/DESCRIPTION’ ... OK * preparing ‘Pedixplorer’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Pedixplorer.Rmd’ using rmarkdown Error: processing vignette 'Pedixplorer.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘Pedixplorer.Rmd’ --- re-building ‘pedigree_alignment.Rmd’ using rmarkdown Error: processing vignette 'pedigree_alignment.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘pedigree_alignment.Rmd’ --- re-building ‘pedigree_kinship.Rmd’ using rmarkdown Error: processing vignette 'pedigree_kinship.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘pedigree_kinship.Rmd’ --- re-building ‘pedigree_object.Rmd’ using rmarkdown Error: processing vignette 'pedigree_object.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘pedigree_object.Rmd’ --- re-building ‘pedigree_plot.Rmd’ using rmarkdown Error: processing vignette 'pedigree_plot.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘pedigree_plot.Rmd’ SUMMARY: processing the following files failed: ‘Pedixplorer.Rmd’ ‘pedigree_alignment.Rmd’ ‘pedigree_kinship.Rmd’ ‘pedigree_object.Rmd’ ‘pedigree_plot.Rmd’ Error: Vignette re-building failed. Execution halted