############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ORFik ### ############################################################################## ############################################################################## * checking for file ‘ORFik/DESCRIPTION’ ... OK * preparing ‘ORFik’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Annotation_Alignment.Rmd’ using rmarkdown Error: processing vignette 'Annotation_Alignment.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘Annotation_Alignment.Rmd’ --- re-building ‘Importing_Data.Rmd’ using rmarkdown Error: processing vignette 'Importing_Data.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘Importing_Data.Rmd’ --- re-building ‘ORFikExperiment.Rmd’ using rmarkdown Error: processing vignette 'ORFikExperiment.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘ORFikExperiment.Rmd’ --- re-building ‘ORFikOverview.Rmd’ using rmarkdown Error: processing vignette 'ORFikOverview.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘ORFikOverview.Rmd’ --- re-building ‘Ribo-seq_pipeline.Rmd’ using rmarkdown Error: processing vignette 'Ribo-seq_pipeline.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘Ribo-seq_pipeline.Rmd’ --- re-building ‘Working_with_transcripts.Rmd’ using rmarkdown Error: processing vignette 'Working_with_transcripts.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘Working_with_transcripts.Rmd’ SUMMARY: processing the following files failed: ‘Annotation_Alignment.Rmd’ ‘Importing_Data.Rmd’ ‘ORFikExperiment.Rmd’ ‘ORFikOverview.Rmd’ ‘Ribo-seq_pipeline.Rmd’ ‘Working_with_transcripts.Rmd’ Error: Vignette re-building failed. Execution halted