############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsExperiment ### ############################################################################## ############################################################################## * checking for file ‘MsExperiment/DESCRIPTION’ ... OK * preparing ‘MsExperiment’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MsExperiment.Rmd’ using rmarkdown Quitting from lines 160-162 [sp] (MsExperiment.Rmd) Error: processing vignette 'MsExperiment.Rmd' failed with diagnostics: BiocParallel errors 1 remote errors, element index: 2 0 unevaluated and other errors first remote error: Error: Can not open file /home/biocbuild/.cache/R/rpx/27ed6720560c85_QEP2LC6_HeLa_50ng_251120_02-calib.mzML! Original error was: Error in eval(expr, envir): [SpectrumList_mzML::create()] Bad istream. --- failed re-building ‘MsExperiment.Rmd’ SUMMARY: processing the following file failed: ‘MsExperiment.Rmd’ Error: Vignette re-building failed. Execution halted