############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MethylSeekR ### ############################################################################## ############################################################################## * checking for file ‘MethylSeekR/DESCRIPTION’ ... OK * preparing ‘MethylSeekR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MethylSeekR.Rnw’ using Sweave Loading required package: rtracklayer Loading required package: GenomicRanges Loading required package: stats4 Loading required package: BiocGenerics Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, saveRDS, setdiff, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: S4Vectors Attaching package: ‘S4Vectors’ The following object is masked from ‘package:utils’: findMatches The following objects are masked from ‘package:base’: I, expand.grid, unname Loading required package: IRanges Loading required package: GenomeInfoDb Loading required package: parallel Loading required package: mhsmm Loading required package: mvtnorm Error: processing vignette 'MethylSeekR.Rnw' failed with diagnostics: chunk 7 Error in library("BSgenome.Hsapiens.UCSC.hg18") : there is no package called ‘BSgenome.Hsapiens.UCSC.hg18’ --- failed re-building ‘MethylSeekR.Rnw’ SUMMARY: processing the following file failed: ‘MethylSeekR.Rnw’ Error: Vignette re-building failed. Execution halted