##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL Harman
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’
* installing *source* package ‘Harman’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (conda-forge gcc 14.2.0-1) 14.2.0’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -D_ARRAYALIGNEMT=4 -D_USE_RCPP=1 -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I/usr/local/include   `/home/biocbuild/R/R-4.4.1/bin/Rscript -e "Rcpp:::CxxFlags()"` -I.  -fPIC  -g -O2  -Wall  -c Harman.cpp -o Harman.o
In file included from Harman.cpp:181:
CMapSelectKFromN.h:52:18: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   52 |   CFactorials<T>(size_t maxN)
      |                  ^~~~~~
CMapSelectKFromN.h:52:18: note: remove the '< >'
Harman.cpp: In function 'SEXPREC* HarmanMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
Harman.cpp:3008:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
 3008 |   else
      |   ^~~~
Harman.cpp:3022:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
 3022 |     std::vector<unsigned int>    tr_std_tmp     = Rcpp::as<std::vector<unsigned int> >(tr) ;
      |     ^~~
In file included from Harman.cpp:182:
CSelectRandom.h: In instantiation of 'std::vector<unsigned int>* CSelectRandom<T>::ReturnVectOf32bitIntegersInRange_CSTDLIB(size_t, size_t, size_t, size_t) [with T = double; size_t = long unsigned int]':
Harman.cpp:1764:79:   required from here
 1764 |                                         t_v_random32bit = _RandomSelect->ReturnVectOf32bitIntegersInRange_CSTDLIB(max_combinations, 0, 0, i_XvectSize  ) ;
      |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CSelectRandom.h:943:48: warning: comparison of integer expressions of different signedness: 'long long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  943 |                                 while (currval < howManyIN)
      |                                        ~~~~~~~~^~~~~~~~~~~
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o Harman.so Harman.o -L/home/biocbuild/R/R-4.4.1/lib -lR
installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-Harman/00new/Harman/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Harman)