############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data HPAanalyze ### ############################################################################## ############################################################################## * checking for file ‘HPAanalyze/DESCRIPTION’ ... OK * preparing ‘HPAanalyze’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘a_HPAanalyze_quick_start.Rmd’ using rmarkdown Error: processing vignette 'a_HPAanalyze_quick_start.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘a_HPAanalyze_quick_start.Rmd’ --- re-building ‘b_HPAanalyze_indepth.Rmd’ using rmarkdown Error: processing vignette 'b_HPAanalyze_indepth.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘b_HPAanalyze_indepth.Rmd’ --- re-building ‘c_HPAanalyze_case_query.Rmd’ using rmarkdown Error: processing vignette 'c_HPAanalyze_case_query.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘c_HPAanalyze_case_query.Rmd’ --- re-building ‘d_HPAanalyze_case_offline_xml.Rmd’ using rmarkdown Error: processing vignette 'd_HPAanalyze_case_offline_xml.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘d_HPAanalyze_case_offline_xml.Rmd’ --- re-building ‘e_HPAanalyze_case_json.Rmd’ using rmarkdown Error: processing vignette 'e_HPAanalyze_case_json.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘e_HPAanalyze_case_json.Rmd’ --- re-building ‘f_HPAanalyze_case_images.Rmd’ using rmarkdown Error: processing vignette 'f_HPAanalyze_case_images.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘f_HPAanalyze_case_images.Rmd’ --- re-building ‘z_HPAanalyze_paper_figures.Rmd’ using rmarkdown Error: processing vignette 'z_HPAanalyze_paper_figures.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘z_HPAanalyze_paper_figures.Rmd’ SUMMARY: processing the following files failed: ‘a_HPAanalyze_quick_start.Rmd’ ‘b_HPAanalyze_indepth.Rmd’ ‘c_HPAanalyze_case_query.Rmd’ ‘d_HPAanalyze_case_offline_xml.Rmd’ ‘e_HPAanalyze_case_json.Rmd’ ‘f_HPAanalyze_case_images.Rmd’ ‘z_HPAanalyze_paper_figures.Rmd’ Error: Vignette re-building failed. Execution halted