############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data Glimma ### ############################################################################## ############################################################################## * checking for file ‘Glimma/DESCRIPTION’ ... OK * preparing ‘Glimma’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘DESeq2.Rmd’ using rmarkdown Error: processing vignette 'DESeq2.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘DESeq2.Rmd’ --- re-building ‘limma_edger.Rmd’ using rmarkdown Error: processing vignette 'limma_edger.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘limma_edger.Rmd’ --- re-building ‘single_cell_edger.Rmd’ using rmarkdown Error: processing vignette 'single_cell_edger.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘single_cell_edger.Rmd’ SUMMARY: processing the following files failed: ‘DESeq2.Rmd’ ‘limma_edger.Rmd’ ‘single_cell_edger.Rmd’ Error: Vignette re-building failed. Execution halted