############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOstats ### ############################################################################## ############################################################################## * checking for file ‘GOstats/DESCRIPTION’ ... OK * preparing ‘GOstats’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GOstatsForUnsupportedOrganisms.Rmd’ using rmarkdown Warning: call dbDisconnect() when finished working with a connection [WARNING] Could not parse YAML metadata at line 19 column 1: :2:68: Unexpected ' ' [WARNING] This document format requires a nonempty element. Please specify either 'title' or 'pagetitle' in the metadata, e.g. by using --metadata pagetitle="..." on the command line. Falling back to 'GOstatsForUnsupportedOrganisms.knit' --- finished re-building ‘GOstatsForUnsupportedOrganisms.Rmd’ --- re-building ‘GOstatsHyperG.Rmd’ using rmarkdown --- finished re-building ‘GOstatsHyperG.Rmd’ --- re-building ‘GOvis.Rmd’ using rmarkdown Warning in doTryCatch(return(expr), name, parentenv, handler) : "nodeAttrs" is not a graphical parameter Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Killed