############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOstats ### ############################################################################## ############################################################################## * checking for file ‘GOstats/DESCRIPTION’ ... OK * preparing ‘GOstats’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GOstatsForUnsupportedOrganisms.Rmd’ using rmarkdown Warning: call dbDisconnect() when finished working with a connection [WARNING] This document format requires a nonempty element. Defaulting to 'GOstatsForUnsupportedOrganisms.knit' as the title. To specify a title, use 'title' in metadata or --metadata title="...". --- finished re-building ‘GOstatsForUnsupportedOrganisms.Rmd’ --- re-building ‘GOstatsHyperG.Rmd’ using rmarkdown --- finished re-building ‘GOstatsHyperG.Rmd’ --- re-building ‘GOvis.Rmd’ using rmarkdown Warning in doTryCatch(return(expr), name, parentenv, handler) : "nodeAttrs" is not a graphical parameter Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped