##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL GENIE3
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘GENIE3’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c GENIE3.c -o GENIE3.o
GENIE3.c: In function ‘find_the_best_threshold_multiregr’:
GENIE3.c:1370:27: warning: ‘best_info’ may be used uninitialized [-Wmaybe-uninitialized]
 1370 |     current_threshold_info=best_info;
      |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
GENIE3.c:1328:31: note: ‘best_info’ was declared here
 1328 |   SCORE_TYPE best_score=-1.0, best_info, current_score, w;
      |                               ^~~~~~~~~
GENIE3.c:1368:24: warning: ‘best_threshold’ may be used uninitialized [-Wmaybe-uninitialized]
 1368 |     current_threshold.f=best_threshold;
      |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
GENIE3.c:1329:9: note: ‘best_threshold’ was declared here
 1329 |   float best_threshold;
      |         ^~~~~~~~~~~~~~
GENIE3.c: In function ‘build_one_tree_ensemble’:
GENIE3.c:1052:7: warning: ‘fp’ may be used uninitialized [-Wmaybe-uninitialized]
 1052 |       write_one_tree(current_tree, fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GENIE3.c:987:9: note: ‘fp’ was declared here
  987 |   FILE *fp;
      |         ^~
GENIE3.c: In function ‘find_the_best_threshold_symb_multiregr’:
GENIE3.c:1466:27: warning: ‘best_info’ may be used uninitialized [-Wmaybe-uninitialized]
 1466 |     current_threshold_info=best_info;
      |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
GENIE3.c:1412:31: note: ‘best_info’ was declared here
 1412 |   SCORE_TYPE best_score=-1.0, best_info, current_score;
      |                               ^~~~~~~~~
GENIE3.c: In function ‘compute_ltrees_variable_importance_multiregr_separate’:
GENIE3.c:1753:6: warning: ‘flag_continue’ may be used uninitialized [-Wmaybe-uninitialized]
 1753 |   if (flag_continue == 1) {
      |      ^
GENIE3.c:1725:7: note: ‘flag_continue’ was declared here
 1725 |   int flag_continue;
      |       ^~~~~~~~~~~~~
gcc -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o GENIE3.so GENIE3.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-GENIE3/00new/GENIE3/libs
** R
** inst
** byte-compile and prepare package for lazy loading
in method for ‘GENIE3’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘GENIE3’ with signature ‘"ExpressionSet"’: no definition for class “ExpressionSet”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GENIE3)