############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r DeepPINCS -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DeepPINCS ### ############################################################################## ############################################################################## * checking for file 'DeepPINCS/DESCRIPTION' ... OK * preparing 'DeepPINCS': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'DeepPINCS.Rmd' using rmarkdown 2024-07-15 17:28:38.426646: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`. 2024-07-15 17:28:45.698205: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`. 2024-07-15 17:29:14.765906: I tensorflow/core/platform/cpu_feature_guard.cc:210] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations. To enable the following instructions: AVX2 FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags. Quitting from lines 82-108 [unnamed-chunk-3] (DeepPINCS.Rmd) Error: processing vignette 'DeepPINCS.Rmd' failed with diagnostics: ValueError: For a `build()` method with more than one argument, all arguments should have a `_shape` suffix and match an argument from `call()`. E.g. `build(self, foo_shape, bar_shape)` For layer 'MultiLinear', Received `build()` argument `self`, which does not end in `_shape`. Run `reticulate::py_last_error()` for details. --- failed re-building 'DeepPINCS.Rmd' SUMMARY: processing the following file failed: 'DeepPINCS.Rmd' Error: Vignette re-building failed. Execution halted