############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 DNAcycP2 ### ############################################################################## ############################################################################## * checking for file ‘DNAcycP2/DESCRIPTION’ ... OK * preparing ‘DNAcycP2’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘dnacycp2.Rmd’ using rmarkdown Quitting from dnacycp2.Rmd:155-163 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `lock()`: ! Cannot open lock file: No such file or directory --- Backtrace: ▆ 1. └─DNAcycP2::cycle_fasta(ex1_file, smooth = TRUE, n_cores = 1, chunk_length = 1000) 2. └─basilisk::basiliskStart(env1) 3. └─basilisk::obtainEnvironmentPath(env) 4. └─basilisk::lockExternalDir(exdir, exclusive = FALSE) 5. └─dir.expiry::lockDirectory(path, ...) 6. └─filelock::lock(plock, exclusive = FALSE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'dnacycp2.Rmd' failed with diagnostics: Cannot open lock file: No such file or directory --- failed re-building ‘dnacycp2.Rmd’ SUMMARY: processing the following file failed: ‘dnacycp2.Rmd’ Error: Vignette re-building failed. Execution halted