############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CopyNumberPlots ### ############################################################################## ############################################################################## * checking for file ‘CopyNumberPlots/DESCRIPTION’ ... OK * preparing ‘CopyNumberPlots’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘CopyNumberPlots.Rmd’ using rmarkdown 2025-05-12 18:45:12.866 R[91027:62274547] XType: com.apple.fonts is not accessible. 2025-05-12 18:45:12.867 R[91027:62274547] XType: XTFontStaticRegistry is enabled. Quitting from CopyNumberPlots.Rmd:406-410 [unnamed-chunk-18] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `options()`: ! invalid 'scipen' --- Backtrace: ▆ 1. └─karyoploteR::kpAddBaseNumbers(kp) 2. └─base::options(scipen = old.scipen) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'CopyNumberPlots.Rmd' failed with diagnostics: invalid 'scipen' --- failed re-building ‘CopyNumberPlots.Rmd’ SUMMARY: processing the following file failed: ‘CopyNumberPlots.Rmd’ Error: Vignette re-building failed. Execution halted