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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:ComplexHeatmap.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings ComplexHeatmap_2.22.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/ComplexHeatmap.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘ComplexHeatmap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ComplexHeatmap’ version ‘2.22.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ComplexHeatmap’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-AnnotationFunction.R’
  Running ‘test-ColorMapping-class.R’
  Running ‘test-Heatmap-class.R’
  Running ‘test-Heatmap-cluster.R’
  Running ‘test-HeatmapAnnotation.R’
  Running ‘test-HeatmapList-class.R’
  Running ‘test-Legend.R’
  Running ‘test-SingleAnnotation.R’
  Running ‘test-annotation_axis.R’
  Running ‘test-dendrogram.R’
  Running ‘test-gridtext.R’
  Running ‘test-interactive.R’
  Running ‘test-multiple-page.R’
  Running ‘test-oncoPrint.R’
  Running ‘test-pheatmap.R’
  Running ‘test-textbox.R’
  Running ‘test-upset.R’
  Running ‘test-utils.R’
  Running ‘testthat-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... NOTE
Package vignettes with \VignetteEngine{} not specifying an engine package:
  ‘complex_heatmap.rmd’
  ‘most_probably_asked_questions.Rmd’
Engines should be specified as \VignetteEngine{PKG::ENG}.
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.20-bioc/meat/ComplexHeatmap.Rcheck/00check.log’
for details.