############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data CluMSID ### ############################################################################## ############################################################################## * checking for file ‘CluMSID/DESCRIPTION’ ... OK * preparing ‘CluMSID’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘CluMSID_DI-MSMS.Rmd’ using rmarkdown Error: processing vignette 'CluMSID_DI-MSMS.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘CluMSID_DI-MSMS.Rmd’ --- re-building ‘CluMSID_GC-EI-MS.Rmd’ using rmarkdown Error: processing vignette 'CluMSID_GC-EI-MS.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘CluMSID_GC-EI-MS.Rmd’ --- re-building ‘CluMSID_MTBLS.Rmd’ using rmarkdown Error: processing vignette 'CluMSID_MTBLS.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘CluMSID_MTBLS.Rmd’ --- re-building ‘CluMSID_lowres-LC-MSMS.Rmd’ using rmarkdown Error: processing vignette 'CluMSID_lowres-LC-MSMS.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘CluMSID_lowres-LC-MSMS.Rmd’ --- re-building ‘CluMSID_tutorial.Rmd’ using rmarkdown Error: processing vignette 'CluMSID_tutorial.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘CluMSID_tutorial.Rmd’ SUMMARY: processing the following files failed: ‘CluMSID_DI-MSMS.Rmd’ ‘CluMSID_GC-EI-MS.Rmd’ ‘CluMSID_MTBLS.Rmd’ ‘CluMSID_lowres-LC-MSMS.Rmd’ ‘CluMSID_tutorial.Rmd’ Error: Vignette re-building failed. Execution halted