############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data CellaRepertorium ### ############################################################################## ############################################################################## * checking for file ‘CellaRepertorium/DESCRIPTION’ ... OK * preparing ‘CellaRepertorium’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to process help pages * creating vignettes ... ERROR --- re-building ‘cdr3_clustering.Rmd’ using rmarkdown Error: processing vignette 'cdr3_clustering.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘cdr3_clustering.Rmd’ --- re-building ‘cr-overview.Rmd’ using rmarkdown Error: processing vignette 'cr-overview.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘cr-overview.Rmd’ --- re-building ‘mouse_tcell_qc.Rmd’ using rmarkdown Error: processing vignette 'mouse_tcell_qc.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘mouse_tcell_qc.Rmd’ --- re-building ‘repertoire_and_expression.Rmd’ using rmarkdown Error: processing vignette 'repertoire_and_expression.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘repertoire_and_expression.Rmd’ SUMMARY: processing the following files failed: ‘cdr3_clustering.Rmd’ ‘cr-overview.Rmd’ ‘mouse_tcell_qc.Rmd’ ‘repertoire_and_expression.Rmd’ Error: Vignette re-building failed. Execution halted