############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL BASiCStan ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘BASiCStan’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ using C++17 g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"../inst/include" -I"/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include' -I/usr/local/include -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:205, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:28, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:174: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:165: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:271: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/SparseCore:37, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Sparse:26, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:29: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"../inst/include" -I"/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include' -I/usr/local/include -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -Wall -c stanExports_basics_regression.cc -o stanExports_basics_regression.o In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:205, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3, from stanExports_basics_regression.h:23, from stanExports_basics_regression.cc:5: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:174: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:165: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:271: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:18, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/shared_ptr.hpp:17, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/date_time/time_clock.hpp:17, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:15, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 361 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:7: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 508 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 604 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 613 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 615 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/SparseCore:37, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Sparse:26, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:19:52: required from ‘struct Eigen::internal::traits > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:42:59: required from ‘struct Eigen::EigenBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolverBase.h:68:7: required from ‘class Eigen::SolverBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:59:49: required from ‘class Eigen::LDLT >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:46:15: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:69:42: required from ‘class Eigen::LDLT >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:46:15: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:287:19: required from ‘class Eigen::LDLT >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:46:15: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:47:29: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:47:41: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::ArrayWrapper, 0> >, const Eigen::CwiseNullaryOp, Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, 0> >, const Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0> >, const Eigen::CwiseNullaryOp, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:47:45: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/multiply_lower_tri_self_transpose.hpp:35:26: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true>, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1, true>, -1, 1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, true>, -1, 1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from ‘class Eigen::VectorBlock, -1, 1, true>, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/multiply_lower_tri_self_transpose.hpp:35:34: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/linspaced_array.hpp:37:49: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/linspaced_row_vector.hpp:32:28: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/linspaced_row_vector.hpp:32:39: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:53: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:72: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:77: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:71:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:71:29: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:86:43: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:22: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, Eigen::internal::member_sum, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix >, Eigen::internal::member_sum, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix >, Eigen::internal::member_sum, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from ‘class Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:38: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ceil.hpp:57:52: required from ‘stan::math::ceil >(const Eigen::Matrix&):: [with auto:244 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::ceil >(const Eigen::Matrix&)::; T2 = Eigen::Matrix; stan::require_t::type> >* = 0; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ceil.hpp:56:46: required from ‘auto stan::math::ceil(const Container&) [with Container = Eigen::Matrix; stan::require_container_st* = 0; stan::require_not_var_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:197:41: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ceil.hpp:57:52: required from ‘stan::math::ceil >(const Eigen::Matrix&):: [with auto:244 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::ceil >(const Eigen::Matrix&)::; T2 = Eigen::Matrix; stan::require_t::type> >* = 0; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ceil.hpp:56:46: required from ‘auto stan::math::ceil(const Container&) [with Container = Eigen::Matrix; stan::require_container_st* = 0; stan::require_not_var_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:197:41: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70: required from ‘stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::ceil >(const Eigen::Matrix&)::&):: [with auto:6 = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::ceil >(const Eigen::Matrix&)::&)::; Args = {Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::ceil >(const Eigen::Matrix&)::; T2 = Eigen::Matrix; stan::require_t::type> >* = 0; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ceil.hpp:56:46: required from ‘auto stan::math::ceil(const Container&) [with Container = Eigen::Matrix; stan::require_container_st* = 0; stan::require_not_var_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:197:41: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::internal::member_minCoeff, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::internal::member_minCoeff, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::internal::member_minCoeff, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from ‘class Eigen::PartialReduxExpr, Eigen::internal::member_minCoeff, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:203:38: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/one_hot_row_vector.hpp:25:52: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/one_hot_vector.hpp:25:46: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:13:64: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:26:31: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:27:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:27:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:28:38: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0, 5>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:28:39: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:37:40: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:37:40: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_var_estimator.hpp:28:30: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor.hpp:13, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:15, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:7, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combination(std::vector&, const int&, const int&, const int&)’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:73:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 73 | for (std::size_t i = 0; i < p - 1; i++) { | ~~^~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:79:16: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 79 | } while (k < x); | ~~^~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combos(const int&, const double&, const int&, std::vector >&)’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:102:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 102 | for (std::size_t i = 1; i != choose_dimk + 1; i++) { | ~~^~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:105:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 105 | for (std::size_t j = 0; j != k; j++) { | ~~^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::increment(std::vector&, const int&, const double&, const std::vector&, std::vector&)’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:126:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 126 | for (std::size_t j = 0; j != k; j++) { | ~~^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:132:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | while ((first_zero < index.size()) && index[first_zero]) { | ~~~~~~~~~~~^~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:135:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | if (first_zero == index.size()) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:143:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t i = 0; i != first_zero + 1; i++) { | ~~^~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::signcombos(const int&, const double&, const int&, std::vector >&)’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:168:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 168 | for (std::size_t i = 1; i != choose_dimk + 1; i++) { | ~~^~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/ode_store_sensitivities.hpp:40:64: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/arg.hpp:25, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/placeholders.hpp:24, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/apply.hpp:24, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/serialization/array_optimization.hpp:18, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/serialization/array_wrapper.hpp:21, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/serialization/array.hpp:26, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/storage.hpp:22, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/vector.hpp:21, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:23, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint.hpp:25, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor.hpp:16: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/assert.hpp: At global scope: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/traits.hpp:21, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/storage.hpp:27: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include/Rcpp/platform/compiler.h:100, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include/Rcpp/r/headers.h:66, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include/RcppCommon.h:30, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include/Rcpp.h:27, from stanExports_basics_regression.cc:3: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/fusion/functional/invocation/detail/that_ptr.hpp:13, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/fusion/functional/invocation/invoke.hpp:52, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/fusion/functional/adapter/fused.hpp:17, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/fusion/functional/generation/make_fused.hpp:13, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/fusion/include/make_fused.hpp:11, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint/util/resize.hpp:28, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint/util/state_wrapper.hpp:26, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:33: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:92:42: required from ‘stan::math::log_sum_exp >(const Eigen::Matrix&):: [with auto:304 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:93:13: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp >(const Eigen::Matrix&)::; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:83:39: required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:92:42: required from ‘stan::math::log_sum_exp >(const Eigen::Matrix&):: [with auto:304 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:93:13: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp >(const Eigen::Matrix&)::; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:83:39: required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:92:42: required from ‘stan::math::log_sum_exp >(const Eigen::Matrix&):: [with auto:304 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:93:13: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp >(const Eigen::Matrix&)::; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:83:39: required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:92:26: required from ‘stan::math::log_sum_exp >(const Eigen::Matrix&):: [with auto:304 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:93:13: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp >(const Eigen::Matrix&)::; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:83:39: required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:38:59: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 5>, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 5>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 5>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 5>, Eigen::Matrix, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 5>, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 5>, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:46:75: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, Eigen::Product, 5>, Eigen::Matrix, 0>, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >, Eigen::Product, 5>, Eigen::Matrix, 0>, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >, Eigen::Product, 5>, Eigen::Matrix, 0>, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base > >, Eigen::Product, 5>, Eigen::Matrix, 0>, 2, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl > >, Eigen::Product, 5>, Eigen::Matrix, 0>, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product > >, Eigen::Product, 5>, Eigen::Matrix, 0>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:46:76: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:135:41: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/hmm_latent_rng.hpp:83:27: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_cholesky_rng.hpp:49:68: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1>, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 1>, Eigen::Transpose >, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 1>, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 1>, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_cholesky_rng.hpp:49:68: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::TriangularView >, 2>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::TriangularView >, 2>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::TriangularView >, 2>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::TriangularView >, 2>, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::TriangularView >, 2>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::TriangularView >, 2>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:42: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::TriangularView >, 2>, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::TriangularView >, 2>, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::TriangularView >, 2>, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::TriangularView >, 2>, 0>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:32: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose >, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose >, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/inv_wishart_rng.hpp:27:40: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/inv_wishart_rng.hpp:27:40: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/inv_wishart_rng.hpp:27:40: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:89:47: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:89:54: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 6>, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 6>, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 6>, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, 6>, Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, 6>, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:109:64: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 6>, Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 6>, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 6>, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, 6>, Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:108:51: recursively required by substitution of ‘template const Eigen::internal::triangular_solve_retval >, 6>, Other> Eigen::TriangularViewImpl >, 6, Eigen::Dense>::solve(const Eigen::MatrixBase&) const [with int Side = ; Other = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:108:51: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from ‘struct Eigen::internal::accessors_level >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:110:32: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:110:32: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:110:43: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:111:51: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:111:52: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:62:23: required from ‘static auto stan::math::apply_scalar_unary::type>::value, void>::type>::apply(const T&) [with F = stan::math::lgamma_fun; T = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:72:38: required from ‘struct stan::math::apply_scalar_unary, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lgamma.hpp:120:50: required from ‘auto stan::math::lgamma(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_not_var_matrix_t* = 0; stan::require_not_nonscalar_prim_or_rev_kernel_expression_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multinomial_logit_lpmf.hpp:39:44: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp: In member function ‘virtual std::vector > stan::io::dump::vals_c(const std::string&) const’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:694:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 694 | for (comp_iter = 0, real_iter = 0; real_iter < val_r->second.first.size(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:707:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 707 | real_iter < val_i->second.first.size(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, -1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:102:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:111:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:116:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34: required from ‘class Eigen::RefBase, 0, Eigen::OuterStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Ref.h:281:76: required from ‘class Eigen::Ref, 0, Eigen::OuterStride<> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:76:42: required from ‘class Eigen::LLT, 0, Eigen::OuterStride<> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:142:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:13:7: required from ‘class stan::math::arena_matrix, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:144:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, 1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 0, Eigen::Stride<0, 0> >, 1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:42:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:28:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:28:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:32:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:94:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:94:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:94:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:94:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:94:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17: recursively required by substitution of ‘template static std::true_type stan::is_base_pointer_convertible >::f(const Eigen::EigenBase*) [with OtherDerived = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17: required from ‘struct stan::is_base_pointer_convertible >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_eigen.hpp:20:8: required from ‘struct stan::is_eigen >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:301:19: required by substitution of ‘template class stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type> [with T = Eigen::SparseMatrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:120:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, 0, Eigen::Stride<0, 0> > >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7: required from ‘class Eigen::SparseMapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:148:7: required from ‘class Eigen::SparseMapBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:222:7: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:129:7: required from ‘class stan::math::arena_matrix, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:814:9: required from ‘class stan::math::vari_value, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:419:57: required from ‘const auto& stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::val() const [with T = Eigen::SparseMatrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:120:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:97:21: required from ‘class Eigen::Tridiagonalization >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:111:62: required from ‘class Eigen::SelfAdjointEigenSolver >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigendecompose_sym.hpp:40:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun.hpp:75, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev.hpp:10, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/test_gradients.hpp:7, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:49: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp: In function ‘auto stan::math::generalized_inverse(const VarMat&)’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:67: note: ‘-Wmisleading-indentation’ is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers 67 | if (G.size() == 0) | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:67: note: adding ‘-flarge-source-files’ will allow for more column-tracking support, at the expense of compilation time and memory /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1> >::adj_Op, Eigen::Matrix, -1, 1> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1> >::adj_Op, Eigen::Matrix, -1, 1> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1> >::adj_Op, Eigen::Matrix, -1, 1> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1> >::adj_Op, Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1> >::adj_Op, Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl, -1, 1> >::adj_Op, Eigen::Matrix, -1, 1>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: required from ‘class Eigen::CwiseUnaryView, -1, 1> >::adj_Op, Eigen::Matrix, -1, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/grad.hpp:27:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log, 0> >(const Eigen::Diagonal, 0>&):: [with auto:169 = Eigen::Diagonal, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, 0> >(const Eigen::Diagonal, 0>&)::; T2 = Eigen::Diagonal, 0>; stan::require_t::type> >* = 0; T = Eigen::Diagonal, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Diagonal, 0>; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:49:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log, 0> >(const Eigen::Diagonal, 0>&):: [with auto:169 = Eigen::Diagonal, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, 0> >(const Eigen::Diagonal, 0>&)::; T2 = Eigen::Diagonal, 0>; stan::require_t::type> >* = 0; T = Eigen::Diagonal, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Diagonal, 0>; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:49:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70: required from ‘stan::math::apply_vector_unary, 0>, void>::apply, 0> >(const Eigen::Diagonal, 0>&):: >(const Eigen::Diagonal, 0>&, const stan::math::log, 0> >(const Eigen::Diagonal, 0>&)::&):: [with auto:6 = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary, 0>, void>::apply, 0> >(const Eigen::Diagonal, 0>&):: >(const Eigen::Diagonal, 0>&, const stan::math::log, 0> >(const Eigen::Diagonal, 0>&)::&)::; Args = {Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, 0> >(const Eigen::Diagonal, 0>&)::; T2 = Eigen::Diagonal, 0>; stan::require_t::type> >* = 0; T = Eigen::Diagonal, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Diagonal, 0>; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:49:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:13:7: required from ‘class stan::math::arena_matrix, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:51:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_softmax.hpp:73:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/matrix_power.hpp:63:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/matrix_power.hpp:64:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase*, -1, -1> > >::adj_Op, Eigen::Map*, -1, -1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase*, -1, -1> > >::adj_Op, Eigen::Map*, -1, -1> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase*, -1, -1> > >::adj_Op, Eigen::Map*, -1, -1> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase*, -1, -1> > >::adj_Op, Eigen::Map*, -1, -1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase*, -1, -1> > >::adj_Op, Eigen::Map*, -1, -1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl*, -1, -1> > >::adj_Op, Eigen::Map*, -1, -1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: required from ‘class Eigen::CwiseUnaryView*, -1, -1> > >::adj_Op, Eigen::Map*, -1, -1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/mdivide_left_spd.hpp:67:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/mdivide_left_tri.hpp:85:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Transpose > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Transpose >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:25:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 0, Eigen::Stride<0, 0> >, -1, 1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:55:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:13:7: required from ‘class stan::math::arena_matrix, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:56:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 0, Eigen::Stride<0, 0> >, -1, 1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from ‘class Eigen::VectorBlock, 0, Eigen::Stride<0, 0> >, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:63:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from ‘class Eigen::VectorBlock, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:86:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Block, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Block, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Block, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:86:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> > >, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 0, Eigen::Stride<0, 0> > >, -1, 1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from ‘class Eigen::VectorBlock, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_cov_matrix.hpp:56:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/rows_dot_self.hpp:41:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd.hpp:56:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Transpose > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Transpose >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd.hpp:69:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Transpose > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Transpose > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Matrix, const Eigen::Transpose > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd.hpp:69:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd.hpp:70:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd_V.hpp:61:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd_V.hpp:61:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DiagonalMatrix.h:278:47: required from ‘struct Eigen::internal::traits, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:42:59: required from ‘struct Eigen::EigenBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DiagonalMatrix.h:18:7: required from ‘class Eigen::DiagonalBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DiagonalMatrix.h:293:7: required from ‘class Eigen::DiagonalWrapper, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd_V.hpp:63:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: required from ‘class Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:79:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:79:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:79:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase*, -1, 1> > >::adj_Op, Eigen::Map*, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase*, -1, 1> > >::adj_Op, Eigen::Map*, -1, 1> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase*, -1, 1> > >::adj_Op, Eigen::Map*, -1, 1> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase*, -1, 1> > >::adj_Op, Eigen::Map*, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase*, -1, 1> > >::adj_Op, Eigen::Map*, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl*, -1, 1> > >::adj_Op, Eigen::Map*, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: required from ‘class Eigen::CwiseUnaryView*, -1, 1> > >::adj_Op, Eigen::Map*, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:80:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:111:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:111:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: required from ‘class Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:25:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:27:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:27:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75: required from ‘stan::math::value_of, -1, 1>&>(const Eigen::Matrix, -1, 1>&):: [with auto:11 = const Eigen::Matrix, -1, 1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::value_of, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::; Args = {const Eigen::Matrix, -1, 1, 0, -1, 1>&}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:73:21: required from ‘auto stan::math::value_of(EigMat&&) [with EigMat = const Eigen::Matrix, -1, 1>&; stan::require_eigen_dense_base_t* = 0; stan::require_not_st_arithmetic* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/algebra_solver_fp.hpp:101:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: required from ‘class Eigen::CwiseUnaryView, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/solve_powell.hpp:369:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/solve_powell.hpp:369:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/initialize.hpp:7, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/random_var_context.hpp: In member function ‘virtual std::vector > stan::io::random_var_context::vals_c(const std::string&) const’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/random_var_context.hpp:111: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 111 | for (comp_iter = 0, real_iter = 0; real_iter < val_r.size(); | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:99:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:182:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:183:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:197:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:198:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:263:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:351:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Product, Eigen::Matrix, 0>, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Product, Eigen::Matrix, 0>, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Product, Eigen::Matrix, 0>, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Product, Eigen::Matrix, 0>, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Product, Eigen::Matrix, 0>, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:351:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:459:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:314:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:314:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:314:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:370:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base >, Eigen::Matrix, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl >, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0, 6>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:179:81: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0, 6>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_matrix.hpp:133:17: required from ‘auto stan::math::to_matrix(const std::vector&, int, int) [with T = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/read_dense_inv_metric.hpp:33:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:27:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:29:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:29:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:0: recursively required by substitution of ‘template typename Eigen::ScalarBinaryOpTraits::Scalar, Eigen::internal::scalar_product_op::Scalar> >::ReturnType Eigen::MatrixBase >::dot(const Eigen::MatrixBase&) const [with OtherDerived = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:27:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:28:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:28:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:7, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:68: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp: In member function ‘virtual std::vector > stan::io::array_var_context::vals_c(const std::string&) const’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:304: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 304 | for (comp_iter = 0, real_iter = 0; real_iter < val_r->second.first.size(); | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:317: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 317 | real_iter < val_i->second.first.size(); | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:13:7: required from ‘class stan::math::arena_matrix, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:145:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_header.hpp:11, from stanExports_basics_regression.h:25: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp: At global scope: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:159: warning: ‘stan::math::var stan::model::model_base_crtp::log_prob(std::vector, std::allocator > >&, std::vector&, std::ostream*) const [with M = model_basics_regression_namespace::model_basics_regression; stan::math::var = stan::math::var_value; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 159 | inline math::var log_prob(std::vector& theta, | stanExports_basics_regression.h:1410: note: by ‘model_basics_regression_namespace::model_basics_regression::log_prob’ 1410 | log_prob(std::vector& params_r, std::vector& params_i, | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:154: warning: ‘double stan::model::model_base_crtp::log_prob(std::vector&, std::vector&, std::ostream*) const [with M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 154 | inline double log_prob(std::vector& theta, std::vector& theta_i, | stanExports_basics_regression.h:1410: note: by ‘model_basics_regression_namespace::model_basics_regression::log_prob’ 1410 | log_prob(std::vector& params_r, std::vector& params_i, | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:96: warning: ‘stan::math::var stan::model::model_base_crtp::log_prob(Eigen::Matrix, -1, 1>&, std::ostream*) const [with M = model_basics_regression_namespace::model_basics_regression; stan::math::var = stan::math::var_value; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 96 | inline math::var log_prob(Eigen::Matrix& theta, | stanExports_basics_regression.h:1410: note: by ‘model_basics_regression_namespace::model_basics_regression::log_prob’ 1410 | log_prob(std::vector& params_r, std::vector& params_i, | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:91: warning: ‘double stan::model::model_base_crtp::log_prob(Eigen::VectorXd&, std::ostream*) const [with M = model_basics_regression_namespace::model_basics_regression; Eigen::VectorXd = Eigen::Matrix; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 91 | inline double log_prob(Eigen::VectorXd& theta, | stanExports_basics_regression.h:1410: note: by ‘model_basics_regression_namespace::model_basics_regression::log_prob’ 1410 | log_prob(std::vector& params_r, std::vector& params_i, | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, int>(const Eigen::Map, 0, Eigen::Stride<0, 0> >&, const int&, stan::return_type_t, 0, Eigen::Stride<0, 0> >, int>&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, int>(const Eigen::Map, 0, Eigen::Stride<0, 0> >&, const int&, stan::return_type_t, 0, Eigen::Stride<0, 0> >, int>&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, int>(const Eigen::Map, 0, Eigen::Stride<0, 0> >&, const int&, stan::return_type_t, 0, Eigen::Stride<0, 0> >, int>&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, 0, Eigen::Stride<0, 0> >, int>(const Eigen::Map, 0, Eigen::Stride<0, 0> >&, const int&, stan::return_type_t, 0, Eigen::Stride<0, 0> >, int>&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, 0, Eigen::Stride<0, 0> >, int>(const Eigen::Map, 0, Eigen::Stride<0, 0> >&, const int&, stan::return_type_t, 0, Eigen::Stride<0, 0> >, int>&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_constrain.hpp:102:18: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, 0, Eigen::Stride<0, 0> >; L = int; stan::require_eigen_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_not_st_var* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix; bool Jacobian = false; LB = int; LP = double; Sizes = {int}; T = double]’ stanExports_basics_regression.h:831:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, const int&>(Eigen::Map, 0, Eigen::Stride<0, 0> >&&, const int&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, const int&>(Eigen::Map, 0, Eigen::Stride<0, 0> >&&, const int&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, const int&>(Eigen::Map, 0, Eigen::Stride<0, 0> >&&, const int&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, 0, Eigen::Stride<0, 0> >, const int&>(Eigen::Map, 0, Eigen::Stride<0, 0> >&&, const int&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, 0, Eigen::Stride<0, 0> >, const int&>(Eigen::Map, 0, Eigen::Stride<0, 0> >&&, const int&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_constrain.hpp:83:26: required from ‘auto stan::math::lb_constrain(T&&, L&&) [with T = Eigen::Map, 0, Eigen::Stride<0, 0> >; L = const int&; stan::require_eigen_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_not_st_var* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:388:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix; bool Jacobian = false; LB = int; LP = double; Sizes = {int}; T = double]’ stanExports_basics_regression.h:831:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/multiply.hpp:107:13: required from ‘auto stan::math::multiply(const Mat1&, const Mat2&) [with Mat1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; Mat2 = Eigen::Matrix; stan::require_all_eigen_vt* = 0; stan::require_not_eigen_row_and_col_t* = 0]’ stanExports_basics_regression.h:902:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/multiply.hpp:28:12: required from ‘auto stan::math::multiply(const Mat&, Scal) [with Mat = Eigen::Matrix; Scal = int; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0; stan::require_all_not_st_var* = 0; stan::require_all_not_complex_t::type>* = 0]’ stanExports_basics_regression.h:905:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70: required from ‘stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::exp >(const Eigen::Matrix&)::&):: [with auto:6 = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::exp >(const Eigen::Matrix&)::&)::; Args = {Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::exp >(const Eigen::Matrix&)::; T2 = Eigen::Matrix; stan::require_t::type> >* = 0; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/exp.hpp:62:46: required from ‘auto stan::math::exp(const Container&) [with Container = Eigen::Matrix; stan::require_container_st* = 0]’ stanExports_basics_regression.h:908:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log >(const Eigen::Matrix&):: [with auto:169 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log >(const Eigen::Matrix&)::; T2 = Eigen::Matrix; stan::require_t::type> >* = 0; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Matrix; stan::require_container_st* = 0]’ stanExports_basics_regression.h:917:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70: required from ‘stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::log >(const Eigen::Matrix&)::&):: [with auto:6 = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::log >(const Eigen::Matrix&)::&)::; Args = {Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log >(const Eigen::Matrix&)::; T2 = Eigen::Matrix; stan::require_t::type> >* = 0; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Matrix; stan::require_container_st* = 0]’ stanExports_basics_regression.h:917:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/subtract.hpp:45:13: required from ‘auto stan::math::subtract(const Mat1&, const Mat2&) [with Mat1 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >; Mat2 = Eigen::Matrix; stan::require_all_eigen_t* = 0; stan::require_all_not_st_var* = 0]’ stanExports_basics_regression.h:917:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:35: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose >, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:28:11: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:28:11: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::as_array_or_scalar&>(const std::vector&)::; Args = {const std::vector >&}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:72:21: required from ‘auto stan::math::as_array_or_scalar(T&&) [with T = const std::vector&; stan::require_std_vector_t* = 0; stan::require_not_std_vector_t::type>* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:28:39: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:47:43: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Select.h:52:7: required from ‘class Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:47:55: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/fabs.hpp:67:51: required from ‘stan::math::fabs, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >(const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >&):: [with auto:9 = Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::fabs, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >(const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >&)::; T2 = Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >; stan::require_t::type> >* = 0; T = Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/fabs.hpp:66:46: required from ‘auto stan::math::fabs(const Container&) [with Container = Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:47:37: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > >(const Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >&):: [with auto:169 = Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > >(const Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >&)::; T2 = Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >; stan::require_t::type> >* = 0; T = Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:49:25: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:75: required from ‘stan::return_type_t stan::math::lmgamma(int, T) [with T = double; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lmgamma.hpp:16:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:32: required from ‘stan::return_type_t stan::math::lmgamma(int, T) [with T = double; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lmgamma.hpp:16:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:62:23: required from ‘static auto stan::math::apply_scalar_unary::type>::value, void>::type>::apply(const T&) [with F = stan::math::lgamma_fun; T = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:72:38: required from ‘struct stan::math::apply_scalar_unary, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lgamma.hpp:120:50: required from ‘auto stan::math::lgamma(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_not_var_matrix_t* = 0; stan::require_not_nonscalar_prim_or_rev_kernel_expression_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:29: required from ‘stan::return_type_t stan::math::lmgamma(int, T) [with T = double; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lmgamma.hpp:16:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:28:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27:67: required from ‘Derived& Eigen::ArrayBase::operator+=(const Scalar&) [with Derived = Eigen::ArrayWrapper >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:280:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27:67: required from ‘Derived& Eigen::ArrayBase::operator+=(const Scalar&) [with Derived = Eigen::ArrayWrapper >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:280:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:156:22: required from ‘bool Eigen::DenseBase::allFinite() const [with Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:31:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp: In instantiation of ‘std::vector stan::io::array_var_context::validate_dims(const std::vector >&, T, const std::vector >&) [with T = long unsigned int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:97:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 74 | for (int i = 0; i < dims.size(); i++) { | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp: In instantiation of ‘std::vector stan::io::array_var_context::validate_dims(const std::vector >&, T, const std::vector >&) [with T = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:118:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] stanExports_basics_regression.h: In instantiation of ‘void model_basics_regression_namespace::model_basics_regression::unconstrain_array_impl(const VecVar&, const VecI&, VecVar&, std::ostream*) const [with VecVar = std::vector; VecI = std::vector; stan::require_vector_t* = 0; stan::require_vector_like_vt* = 0; std::ostream = std::basic_ostream]’: stanExports_basics_regression.h:1438:0: required from here stanExports_basics_regression.h:954: warning: variable ‘pos__’ set but not used [-Wunused-but-set-variable] 954 | int pos__ = std::numeric_limits::min(); | stanExports_basics_regression.h: In instantiation of ‘void model_basics_regression_namespace::model_basics_regression::unconstrain_array_impl(const VecVar&, const VecI&, VecVar&, std::ostream*) const [with VecVar = Eigen::Matrix; VecI = std::vector; stan::require_vector_t* = 0; stan::require_vector_like_vt* = 0; std::ostream = std::basic_ostream]’: stanExports_basics_regression.h:1448:0: required from here stanExports_basics_regression.h:954: warning: variable ‘pos__’ set but not used [-Wunused-but-set-variable] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp: In instantiation of ‘SEXPREC* rstan::stan_fit::standalone_gqs(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’: stanExports_basics_regression.cc:30:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1252: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:181:31: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:181:31: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:182:31: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:117:39: required from ‘TupleT stan::math::internal::grad_2F1_impl_ab(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:204:78: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:513:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/../plugins/CommonCwiseUnaryOps.h:62:1: required by substitution of ‘template typename Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >::CastXpr::Type Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >::cast() const [with NewType = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/append_row.hpp:102:38: required from ‘Eigen::Matrix::type, -1, 1> stan::math::append_row(const ColVec&, const Scal&) [with ColVec = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scal = double; stan::require_t >* = 0; stan::require_stan_scalar_t* = 0; typename stan::return_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:29:31: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:5, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_2F1_converges.hpp:5, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err.hpp:4, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:12: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:47:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<(((!(Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit)) && (! T::IsVectorAtCompileTime)) && (!(Eigen::internal::traits<_Rhs>::Flags & Eigen::RowMajorBit)))>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:74:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:207:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 207 | for (size_t i = 0; i < x.rows(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:208:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 208 | for (size_t j = 0; j < x.cols(); j++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_diag_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_positive >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_positive.hpp:29:20: required from ‘void stan::math::check_positive(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_diag_inv_metric.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:142:28: required from ‘bool Eigen::DenseBase::hasNaN() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:156:40: required from ‘bool Eigen::DenseBase::allFinite() const [with Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:31:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:142:28: required from ‘bool Eigen::DenseBase::hasNaN() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:156:40: required from ‘bool Eigen::DenseBase::allFinite() const [with Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:30:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta.hpp:70, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/invalid_argument.hpp:4, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:4, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/core.hpp:4, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:10: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_less_or_equal.hpp: In instantiation of ‘void stan::math::check_less_or_equal(const char*, const char*, const T_y&, const T_high&, Idxs ...) [with T_y = long unsigned int; T_high = long int; stan::require_all_stan_scalar_t* = 0; Idxs = {}]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:79:0: required from ‘std::vector stan::io::array_var_context::validate_dims(const std::vector >&, T, const std::vector >&) [with T = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:118:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_less_or_equal.hpp:39:20: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘const long int’ [-Wsign-compare] 39 | if (unlikely(!(y <= high))) { | ~~~^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/compiler_attributes.hpp:9:41: note: in definition of macro ‘unlikely’ 9 | #define unlikely(x) __builtin_expect(!!(x), 0) | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&&)::::, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&&)::::, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&&)::::, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, 0, Eigen::Stride<0, 0> > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&&)::::, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, 0, Eigen::Stride<0, 0> > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&&)::::, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:66: required from ‘stan::math::value_of_rec, 0, Eigen::Stride<0, 0> > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&&):: [with auto:1 = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::value_of_rec, 0, Eigen::Stride<0, 0> > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&&)::; Args = {Eigen::Map, 0, Eigen::Stride<0, 0> >}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:108:21: required from ‘auto stan::math::value_of_rec(T&&) [with T = Eigen::Map, 0, Eigen::Stride<0, 0> >; = void; = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_greater_or_equal.hpp:157:30: required from ‘void stan::math::check_greater_or_equal(const char*, const char*, const T_y&, const T_low&, Idxs ...) [with T_y = std::vector; T_low = int; stan::require_vector_t* = 0; stan::require_not_std_vector_vt* = 0; stan::require_stan_scalar_t* = 0; Idxs = {long unsigned int}]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_greater_or_equal.hpp:327:27: required from ‘void stan::math::check_greater_or_equal(const char*, const char*, const T_y&, const T_low&, Idxs ...) [with T_y = std::vector >; T_low = int; stan::require_std_vector_vt* = 0; stan::require_not_std_vector_t* = 0; Idxs = {}]’ stanExports_basics_regression.h:321:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/subtract.hpp:79:21: required from ‘auto stan::math::subtract(const Mat&, Scal) [with Mat = Eigen::Matrix; Scal = int; stan::require_eigen_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_not_st_var* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_free.hpp:37:29: required from ‘auto stan::math::lb_free(T&&, L&&) [with T = const Eigen::Matrix&; L = const int&; stan::require_not_std_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:253:0: required from ‘void stan::io::serializer::write_free_lb(const L&, const S&) [with S = Eigen::Matrix; L = int; T = double]’ stanExports_basics_regression.h:1094:0: required from ‘void model_basics_regression_namespace::model_basics_regression::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector; stan::require_vector_t* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1429:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/subtract.hpp:79:32: required from ‘auto stan::math::subtract(const Mat&, Scal) [with Mat = Eigen::Matrix; Scal = int; stan::require_eigen_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_not_st_var* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_free.hpp:37:29: required from ‘auto stan::math::lb_free(T&&, L&&) [with T = const Eigen::Matrix&; L = const int&; stan::require_not_std_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:253:0: required from ‘void stan::io::serializer::write_free_lb(const L&, const S&) [with S = Eigen::Matrix; L = int; T = double]’ stanExports_basics_regression.h:1094:0: required from ‘void model_basics_regression_namespace::model_basics_regression::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector; stan::require_vector_t* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1429:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&):: [with auto:169 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::; T2 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_t::type> >* = 0; T = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_free.hpp:37:20: required from ‘auto stan::math::lb_free(T&&, L&&) [with T = const Eigen::Matrix&; L = const int&; stan::require_not_std_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:253:0: required from ‘void stan::io::serializer::write_free_lb(const L&, const S&) [with S = Eigen::Matrix; L = int; T = double]’ stanExports_basics_regression.h:1094:0: required from ‘void model_basics_regression_namespace::model_basics_regression::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector; stan::require_vector_t* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1429:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&):: [with auto:169 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::; T2 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_t::type> >* = 0; T = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_free.hpp:37:20: required from ‘auto stan::math::lb_free(T&&, L&&) [with T = const Eigen::Matrix&; L = const int&; stan::require_not_std_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:253:0: required from ‘void stan::io::serializer::write_free_lb(const L&, const S&) [with S = Eigen::Matrix; L = int; T = double]’ stanExports_basics_regression.h:1094:0: required from ‘void model_basics_regression_namespace::model_basics_regression::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector; stan::require_vector_t* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1429:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70: required from ‘stan::math::apply_vector_unary, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&):: >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&, const stan::math::log, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::&):: [with auto:6 = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&):: >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&, const stan::math::log, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::&)::; Args = {Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::; T2 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_t::type> >* = 0; T = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_free.hpp:37:20: required from ‘auto stan::math::lb_free(T&&, L&&) [with T = const Eigen::Matrix&; L = const int&; stan::require_not_std_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:253:0: required from ‘void stan::io::serializer::write_free_lb(const L&, const S&) [with S = Eigen::Matrix; L = int; T = double]’ stanExports_basics_regression.h:1094:0: required from ‘void model_basics_regression_namespace::model_basics_regression::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector; stan::require_vector_t* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1429:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp: In instantiation of ‘int stan::services::standalone_generate(const Model&, const Eigen::MatrixXd&, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; Eigen::MatrixXd = Eigen::Matrix]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1253:0: required from ‘SEXPREC* rstan::stan_fit::standalone_gqs(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:30:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:55: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 55 | if (p_names.size() != draws.cols()) { | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 71 | for (size_t i = 0; i < draws.rows(); ++i) { | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:72:0: required from ‘int stan::services::standalone_generate(const Model&, const Eigen::MatrixXd&, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; Eigen::MatrixXd = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1253:0: required from ‘SEXPREC* rstan::stan_fit::standalone_gqs(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:30:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/assert.hpp:35, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:20, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:19, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/size_type.hpp:20, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/size.hpp:21, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/functions.hpp:20, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range.hpp:18, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint/util/resize.hpp:22: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::constraint::failed() [with Model = boost::algorithm::FinderConcept >, __gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:81:13: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:65:52: warning: ‘this’ pointer is null [-Wnonnull] 65 | static void failed() { ((Model*)0)->constraints(); } | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:26, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:16, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string.hpp:23, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:4, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:46: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/concept.hpp:40:18: note: in a call to non-static member function ‘void boost::algorithm::FinderConcept::constraints() [with FinderT = boost::algorithm::detail::token_finderF >; IteratorT = __gnu_cxx::__normal_iterator >]’ 40 | void constraints() | ^~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::constraint::failed() [with Model = boost::algorithm::FinderConcept, __gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/find_format.hpp:98:13: required from ‘void boost::algorithm::find_format(SequenceT&, FinderT, FormatterT) [with SequenceT = std::__cxx11::basic_string; FinderT = detail::first_finderF; FormatterT = detail::const_formatF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/replace.hpp:179:44: required from ‘void boost::algorithm::replace_first(SequenceT&, const Range1T&, const Range2T&) [with SequenceT = std::__cxx11::basic_string; Range1T = char [11]; Range2T = char [1]]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:133:29: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:65:52: warning: ‘this’ pointer is null [-Wnonnull] 65 | static void failed() { ((Model*)0)->constraints(); } | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/concept.hpp:40:18: note: in a call to non-static member function ‘void boost::algorithm::FinderConcept::constraints() [with FinderT = boost::algorithm::detail::first_finderF; IteratorT = __gnu_cxx::__normal_iterator >]’ 40 | void constraints() | ^~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::constraint::failed() [with Model = boost::algorithm::FormatterConcept >, boost::algorithm::detail::first_finderF, __gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/find_format.hpp:103:13: required from ‘void boost::algorithm::find_format(SequenceT&, FinderT, FormatterT) [with SequenceT = std::__cxx11::basic_string; FinderT = detail::first_finderF; FormatterT = detail::const_formatF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/replace.hpp:179:44: required from ‘void boost::algorithm::replace_first(SequenceT&, const Range1T&, const Range2T&) [with SequenceT = std::__cxx11::basic_string; Range1T = char [11]; Range2T = char [1]]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:133:29: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:65:52: warning: ‘this’ pointer is null [-Wnonnull] 65 | static void failed() { ((Model*)0)->constraints(); } | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/concept.hpp:65:18: note: in a call to non-static member function ‘void boost::algorithm::FormatterConcept::constraints() [with FormatterT = boost::algorithm::detail::const_formatF >; FinderT = boost::algorithm::detail::first_finderF; IteratorT = __gnu_cxx::__normal_iterator >]’ 65 | void constraints() | ^~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from ‘class Eigen::VectorBlock, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:563:19: required from ‘Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix; DiagType = Eigen::Matrix; SubDiagType = Eigen::Matrix; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:460:49: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:92:26: required from ‘stan::math::log_sum_exp >(const Eigen::Matrix&):: [with auto:304 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:93:13: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp >(const Eigen::Matrix&)::; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:83:39: required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:330: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:72:102: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 433 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 434 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 435 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 460 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 461 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 462 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 465 | typedef QuadPacket RhsPacketx4; | ^~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1080:42: required from ‘struct Eigen::internal::gebp_kernel, 4, 4, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:92:109: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 433 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 434 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 435 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 460 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 461 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 462 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 465 | typedef QuadPacket RhsPacketx4; | ^~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1085:45: required from ‘struct Eigen::internal::gebp_kernel, 4, 4, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:92:109: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 433 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 434 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 435 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 460 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 461 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 462 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 465 | typedef QuadPacket RhsPacketx4; | ^~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CommaInitializer.h:159:10: required from ‘Eigen::CommaInitializer Eigen::DenseBase::operator<<(const Eigen::DenseBase&) [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/append_row.hpp:102:10: required from ‘Eigen::Matrix::type, -1, 1> stan::math::append_row(const ColVec&, const Scal&) [with ColVec = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scal = double; stan::require_t >* = 0; stan::require_stan_scalar_t* = 0; typename stan::return_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:29:31: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Matrix; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Matrix; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Matrix; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:478:32: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::mean() const [with Derived = Eigen::Matrix; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:25:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:451:40: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:91: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from ‘class Eigen::VectorBlock, 1, -1, false>, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:101: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:191:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression.h:661:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression.h:661:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:192:0: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_any_st_var* = 0; stan::return_type_t = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression.h:661:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:193:0: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_any_st_var* = 0; stan::return_type_t = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression.h:661:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression.h:661:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression.h:661:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:197:0: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_any_st_var* = 0; stan::return_type_t = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression.h:661:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:197:0: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_any_st_var* = 0; stan::return_type_t = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression.h:661:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75: required from ‘stan::math::value_of, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&):: [with auto:11 = const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression.h:661:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:213:0: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_any_st_var* = 0; stan::return_type_t = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression.h:661:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:213:0: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_any_st_var* = 0; stan::return_type_t = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression.h:661:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:213:0: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_any_st_var* = 0; stan::return_type_t = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression.h:661:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun.hpp:163: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/simplex_constrain.hpp: In instantiation of ‘auto stan::math::simplex_constrain(const T&, stan::scalar_type_t&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; stan::require_rev_col_vector_t* = 0; stan::scalar_type_t = var_value]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:569:0: required from ‘auto stan::io::deserializer::read_constrain_simplex(LP&, size_t) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LP = stan::math::var_value; stan::require_not_std_vector_t* = 0; T = stan::math::var_value; size_t = long unsigned int]’ stanExports_basics_regression.h:666:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/simplex_constrain.hpp:94: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 94 | for (Eigen::Index k = 0; k < N; ++k) { | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/simplex_constrain.hpp: In instantiation of ‘auto stan::math::simplex_constrain(const T&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; stan::require_rev_col_vector_t* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:571:0: required from ‘auto stan::io::deserializer::read_constrain_simplex(LP&, size_t) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LP = stan::math::var_value; stan::require_not_std_vector_t* = 0; T = stan::math::var_value; size_t = long unsigned int]’ stanExports_basics_regression.h:666:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/simplex_constrain.hpp:40: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | for (Eigen::Index k = 0; k < N; ++k) { | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:34:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_var_matrix.hpp:79:8: required from ‘struct stan::is_any_var_matrix, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/meta/return_var_matrix.hpp:22:7: required by substitution of ‘template using stan::return_var_matrix_t = std::conditional_t::value, stan::math::var_value::type>::type, void>::type>, typename stan::math::promote_scalar_type, typename std::decay::type>::type, void>::type> [with ReturnType = const Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Types = {Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>}]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:36:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:43:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:43:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, 5>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:43:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, 5>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:47:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:48:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, void>&>(arena_matrix, -1, -1>, void>&)::::, const Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, void>&>(arena_matrix, -1, -1>, void>&)::::, const Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, void>&>(arena_matrix, -1, -1>, void>&)::::, const Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, -1>, void>&>(arena_matrix, -1, -1>, void>&)::::, const Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, -1>, void>&>(arena_matrix, -1, -1>, void>&)::::, const Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75: required from ‘stan::math::value_of, -1, -1>, void>&>(arena_matrix, -1, -1>, void>&):: [with auto:11 = stan::math::arena_matrix, -1, -1>, void>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:66:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_var_matrix.hpp:79:8: required from ‘struct stan::is_any_var_matrix, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/meta/return_var_matrix.hpp:22:7: required by substitution of ‘template using stan::return_var_matrix_t = std::conditional_t::value, stan::math::var_value::type>::type, void>::type>, typename stan::math::promote_scalar_type, typename std::decay::type>::type, void>::type> [with ReturnType = const Eigen::Product, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Types = {Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>}]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:65:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = int; T2 = Eigen::Matrix, -1, 1>; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:196:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, 1>; T2 = int; stan::require_matrix_t* = 0; stan::require_not_matrix_t* = 0; stan::require_any_st_var* = 0; stan::require_not_complex_t::type>* = 0; stan::require_not_complex_t::type>* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:705:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:163:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = int; T2 = Eigen::Matrix, -1, 1>; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:196:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, 1>; T2 = int; stan::require_matrix_t* = 0; stan::require_not_matrix_t* = 0; stan::require_any_st_var* = 0; stan::require_not_complex_t::type>* = 0; stan::require_not_complex_t::type>* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:705:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:196:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, 1>; T2 = int; stan::require_matrix_t* = 0; stan::require_not_matrix_t* = 0; stan::require_any_st_var* = 0; stan::require_not_complex_t::type>* = 0; stan::require_not_complex_t::type>* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:705:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:170:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = int; T2 = Eigen::Matrix, -1, 1>; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:196:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, 1>; T2 = int; stan::require_matrix_t* = 0; stan::require_not_matrix_t* = 0; stan::require_any_st_var* = 0; stan::require_not_complex_t::type>* = 0; stan::require_not_complex_t::type>* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:705:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:172:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = int; T2 = Eigen::Matrix, -1, 1>; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:196:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, 1>; T2 = int; stan::require_matrix_t* = 0; stan::require_not_matrix_t* = 0; stan::require_any_st_var* = 0; stan::require_not_complex_t::type>* = 0; stan::require_not_complex_t::type>* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:705:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>&>(const Eigen::Matrix, -1, -1>&)::::, const Eigen::Matrix, -1, -1> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>&>(const Eigen::Matrix, -1, -1>&)::::, const Eigen::Matrix, -1, -1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>&>(const Eigen::Matrix, -1, -1>&)::::, const Eigen::Matrix, -1, -1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, -1>&>(const Eigen::Matrix, -1, -1>&)::::, const Eigen::Matrix, -1, -1>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, -1>&>(const Eigen::Matrix, -1, -1>&)::::, const Eigen::Matrix, -1, -1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75: required from ‘stan::math::value_of, -1, -1>&>(const Eigen::Matrix, -1, -1>&):: [with auto:11 = const Eigen::Matrix, -1, -1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:53:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:716:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:120:37: required from ‘auto stan::math::subtract(const VarMat1&, const VarMat2&) [with VarMat1 = Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> >; VarMat2 = Eigen::Matrix, -1, 1>; stan::require_all_rev_matrix_t* = 0]’ stanExports_basics_regression.h:723:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:120:47: required from ‘auto stan::math::subtract(const VarMat1&, const VarMat2&) [with VarMat1 = Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> >; VarMat2 = Eigen::Matrix, -1, 1>; stan::require_all_rev_matrix_t* = 0]’ stanExports_basics_regression.h:723:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_var_matrix.hpp:79:8: required from ‘struct stan::is_any_var_matrix, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1, 0, -1, 1> > >, const Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1, 0, -1, 1> > >, Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1, 0, -1, 1> >, Eigen::Matrix, -1, 1, 0, -1, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/meta/return_var_matrix.hpp:22:7: required by substitution of ‘template using stan::return_var_matrix_t = std::conditional_t::value, stan::math::var_value::type>::type, void>::type>, typename stan::math::promote_scalar_type, typename std::decay::type>::type, void>::type> [with ReturnType = const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >; Types = {Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1, 0, -1, 1> >, Eigen::Matrix, -1, 1, 0, -1, 1>}]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:121:9: required from ‘auto stan::math::subtract(const VarMat1&, const VarMat2&) [with VarMat1 = Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> >; VarMat2 = Eigen::Matrix, -1, 1>; stan::require_all_rev_matrix_t* = 0]’ stanExports_basics_regression.h:723:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:124:40: required from ‘auto stan::math::subtract(const VarMat1&, const VarMat2&) [with VarMat1 = Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> >; VarMat2 = Eigen::Matrix, -1, 1>; stan::require_all_rev_matrix_t* = 0]’ stanExports_basics_regression.h:723:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = var_value; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:742:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = var_value; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:742:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = var_value; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:742:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:163:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = var_value; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:742:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:163:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = var_value; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:742:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:170:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = var_value; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:742:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:172:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = var_value; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:742:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, const Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, const Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, const Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, const Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, const Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_var_matrix.hpp:79:8: required from ‘struct stan::is_any_var_matrix, const Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1, 0, -1, 1> >, const Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1, 0, -1, 1> > >, Eigen::Matrix, -1, 1, 0, -1, 1>, Eigen::Matrix, -1, 1, 0, -1, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/meta/return_var_matrix.hpp:22:7: required by substitution of ‘template using stan::return_var_matrix_t = std::conditional_t::value, stan::math::var_value::type>::type, void>::type>, typename stan::math::promote_scalar_type, typename std::decay::type>::type, void>::type> [with ReturnType = const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, const Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >; Types = {Eigen::Matrix, -1, 1, 0, -1, 1>, Eigen::Matrix, -1, 1, 0, -1, 1>}]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:31:0: required from ‘auto stan::math::elt_multiply(const Mat1&, const Mat2&) [with Mat1 = Eigen::Matrix, -1, 1>; Mat2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_any_rev_matrix_t* = 0]’ stanExports_basics_regression.h:758:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:35:0: required from ‘auto stan::math::elt_multiply(const Mat1&, const Mat2&) [with Mat1 = Eigen::Matrix, -1, 1>; Mat2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_any_rev_matrix_t* = 0]’ stanExports_basics_regression.h:758:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:49:0: required from ‘auto stan::math::elt_multiply(const Mat1&, const Mat2&) [with Mat1 = Eigen::Matrix, -1, 1>; Mat2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_any_rev_matrix_t* = 0]’ stanExports_basics_regression.h:758:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:51:0: required from ‘auto stan::math::elt_multiply(const Mat1&, const Mat2&) [with Mat1 = Eigen::Matrix, -1, 1>; Mat2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_any_rev_matrix_t* = 0]’ stanExports_basics_regression.h:758:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:57:0: required from ‘auto stan::math::elt_multiply(const Mat1&, const Mat2&) [with Mat1 = Eigen::Matrix, -1, 1>; Mat2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_any_rev_matrix_t* = 0]’ stanExports_basics_regression.h:758:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:223:33: required from ‘auto stan::math::add(const Var&, const VarMat&) [with Var = var_value; VarMat = Eigen::Matrix, -1, 1>; stan::require_var_vt* = 0; stan::require_rev_matrix_t* = 0]’ stanExports_basics_regression.h:766:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:57:51: required from ‘stan::math::as_array_or_scalar, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >&>(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >&):: [with auto:13 = const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/divide.hpp:47:29: required from ‘auto stan::math::divide(const T1&, const T2&) [with T1 = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; T2 = double; stan::require_any_eigen_t* = 0; stan::require_all_not_st_var* = 0]’ stanExports_basics_regression.h:204:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = double; typename stan::base_type::type = double; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:913:0: required from ‘void model_basics_regression_namespace::model_basics_regression::write_array_impl(RNG&, VecR&, VecI&, VecVar&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; VecR = std::vector; VecI = std::vector; VecVar = std::vector; stan::require_vector_like_vt* = 0; stan::require_vector_like_vt* = 0; stan::require_vector_vt* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1401:0: required from ‘void model_basics_regression_namespace::model_basics_regression::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1105:0: required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/divide.hpp:47:33: required from ‘auto stan::math::divide(const T1&, const T2&) [with T1 = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; T2 = double; stan::require_any_eigen_t* = 0; stan::require_all_not_st_var* = 0]’ stanExports_basics_regression.h:204:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = double; typename stan::base_type::type = double; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:913:0: required from ‘void model_basics_regression_namespace::model_basics_regression::write_array_impl(RNG&, VecR&, VecI&, VecVar&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; VecR = std::vector; VecI = std::vector; VecVar = std::vector; stan::require_vector_like_vt* = 0; stan::require_vector_like_vt* = 0; stan::require_vector_vt* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1401:0: required from ‘void model_basics_regression_namespace::model_basics_regression::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1105:0: required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/divide.hpp:47:64: required from ‘auto stan::math::divide(const T1&, const T2&) [with T1 = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; T2 = double; stan::require_any_eigen_t* = 0; stan::require_all_not_st_var* = 0]’ stanExports_basics_regression.h:204:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = double; typename stan::base_type::type = double; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:913:0: required from ‘void model_basics_regression_namespace::model_basics_regression::write_array_impl(RNG&, VecR&, VecI&, VecVar&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; VecR = std::vector; VecI = std::vector; VecVar = std::vector; stan::require_vector_like_vt* = 0; stan::require_vector_like_vt* = 0; stan::require_vector_vt* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1401:0: required from ‘void model_basics_regression_namespace::model_basics_regression::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1105:0: required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/exp.hpp:63:51: required from ‘stan::math::exp, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&):: [with auto:215 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::exp, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::; T2 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_t::type> >* = 0; T = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/exp.hpp:62:46: required from ‘auto stan::math::exp(const Container&) [with Container = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_container_st* = 0]’ stanExports_basics_regression.h:203:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = double; typename stan::base_type::type = double; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:913:0: required from ‘void model_basics_regression_namespace::model_basics_regression::write_array_impl(RNG&, VecR&, VecI&, VecVar&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; VecR = std::vector; VecI = std::vector; VecVar = std::vector; stan::require_vector_like_vt* = 0; stan::require_vector_like_vt* = 0; stan::require_vector_vt* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1401:0: required from ‘void model_basics_regression_namespace::model_basics_regression::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1105:0: required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/exp.hpp:63:51: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/exp.hpp:62:46: required from ‘auto stan::math::exp(const Container&) [with Container = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_container_st* = 0]’ stanExports_basics_regression.h:203:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = double; typename stan::base_type::type = double; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:913:0: required from ‘void model_basics_regression_namespace::model_basics_regression::write_array_impl(RNG&, VecR&, VecI&, VecVar&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; VecR = std::vector; VecI = std::vector; VecVar = std::vector; stan::require_vector_like_vt* = 0; stan::require_vector_like_vt* = 0; stan::require_vector_vt* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1401:0: required from ‘void model_basics_regression_namespace::model_basics_regression::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1105:0: required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70: required from ‘stan::math::apply_vector_unary, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&):: >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&, const stan::math::exp, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::&):: [with auto:6 = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/exp.hpp:62:46: required from ‘auto stan::math::exp(const Container&) [with Container = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_container_st* = 0]’ stanExports_basics_regression.h:203:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = double; typename stan::base_type::type = double; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:913:0: required from ‘void model_basics_regression_namespace::model_basics_regression::write_array_impl(RNG&, VecR&, VecI&, VecVar&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; VecR = std::vector; VecI = std::vector; VecVar = std::vector; stan::require_vector_like_vt* = 0; stan::require_vector_like_vt* = 0; stan::require_vector_vt* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1401:0: required from ‘void model_basics_regression_namespace::model_basics_regression::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1105:0: required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15: required from ‘stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:36:15: required from ‘stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16: required from ‘stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:40:16: required from ‘stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/beta.hpp:1721, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/binomial.hpp:15, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:46, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:14: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp: In instantiation of ‘boost::math::detail::temme_root_finder::temme_root_finder(T, T) [with T = double]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: required from ‘T boost::math::detail::temme_method_2_ibeta_inverse(T, T, T, T, T, const Policy&) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:48: required from ‘T boost::math::detail::ibeta_inv_imp(T, T, T, T, const Policy&, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:30: required from ‘boost::math::tools::promote_args_t boost::math::ibeta_inv(T1, T2, T3, T4*, const Policy&) [with T1 = double; T2 = double; T3 = double; T4 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:20: required from ‘boost::math::tools::promote_args_t boost::math::ibeta_inv(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:32: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable ‘x_extrema’ [-Wunused-variable] 29 | const T x_extrema = 1 / (1 + a); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, member_sum, 1>; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; Func = Eigen::internal::scalar_max_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix >, Eigen::internal::member_sum, 1> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:49: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 2, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix >, 2, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix >, 2, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::Matrix >, 2, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::Matrix >, 2, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::Matrix >, 2, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:203:15: required from ‘PacketType Eigen::internal::evaluator >::packet(Eigen::Index) const [with int LoadMode = 0; PacketType = __vector(2) double; ArgType = const Eigen::CwiseUnaryOp, const Eigen::Matrix >; MemberOp = Eigen::internal::member_sum; int Direction = 1; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:251:78: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; Func = Eigen::internal::scalar_max_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix >, Eigen::internal::member_sum, 1> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:49: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:277: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::Matrix >, 2, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Matrix >, 2, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:217:20: required from ‘PacketType Eigen::internal::evaluator >::packet(Eigen::Index) const [with int LoadMode = 0; PacketType = __vector(2) double; ArgType = const Eigen::CwiseUnaryOp, const Eigen::Matrix >; MemberOp = Eigen::internal::member_sum; int Direction = 1; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:251:78: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; Func = Eigen::internal::scalar_max_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix >, Eigen::internal::member_sum, 1> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:49: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::Matrix >, 1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::Matrix >, 1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::Matrix >, 1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:72: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = const Eigen::CwiseUnaryOp, const Eigen::Matrix >; MemberOp = Eigen::internal::member_sum; int Direction = 1; Scalar = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:268:34: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; Func = Eigen::internal::scalar_max_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix >, Eigen::internal::member_sum, 1> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:49: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = false]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:100:15: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2459:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2459 | PacketBlock kernel; | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int Pack1 = 4; int Pack2 = 2; Packet = __vector(2) double; bool Conjugate = false; bool PanelMode = false]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:106:17: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2256:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2256 | typedef typename unpacket_traits::half>::half QuarterPacket; | ^~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2258:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2258 | HalfPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2259:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2259 | QuarterPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2259:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2298:39: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2298 | PacketBlock kernel_half; | ^~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2298:39: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2304 | PacketBlock kernel_quarter; | ^~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gebp_kernel::operator()(const DataMapper&, const LhsScalar*, const RhsScalar*, Index, Index, Index, ResScalar, Index, Index, Index, Index) [with LhsScalar = double; RhsScalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int mr = 4; int nr = 4; bool ConjugateLhs = false; bool ConjugateRhs = false; ResScalar = double]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:113:15: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1920:103: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1920 | const int SResPacketHalfSize = unpacket_traits::half>::size; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1921:138: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1921 | const int SResPacketQuarterSize = unpacket_traits::half>::half>::size; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1921:138: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1977:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1977 | typedef typename conditional=8,typename unpacket_traits::half,SResPacket>::type SResPacketHalf; | ^~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1978:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1978 | typedef typename conditional=8,typename unpacket_traits::half,SLhsPacket>::type SLhsPacketHalf; | ^~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1979:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1979 | typedef typename conditional=8,typename unpacket_traits::half,SRhsPacket>::type SRhsPacketHalf; | ^~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1980:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1980 | typedef typename conditional=8,typename unpacket_traits::half,SAccPacket>::type SAccPacketHalf; | ^~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:155:52: required from ‘void Eigen::internal::tribb_kernel::operator()(ResScalar*, Index, Index, const LhsScalar*, const RhsScalar*, Index, Index, const ResScalar&) [with LhsScalar = double; RhsScalar = double; Index = long int; int mr = 4; int nr = 4; bool ConjLhs = false; bool ConjRhs = false; int ResInnerStride = 1; int UpLo = 2; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:116:13: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:116:13: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:28:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:370:46: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:370:35: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:325:26: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 0>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 0>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 0>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 0>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, 0>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:325:43: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:352:35: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:358:80: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:358:67: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, 1, -1, false>, Eigen::Block, -1, 1, false>, 0, 6>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 1, -1, false>, Eigen::Block, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:359:35: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:32: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:379:56: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:387:32: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70: required from ‘stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::sqrt >(const Eigen::Matrix&)::&):: [with auto:6 = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::sqrt >(const Eigen::Matrix&)::&)::; Args = {Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:751:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/elt_divide.hpp:61:22: required from ‘auto stan::math::elt_divide(Scal, const Mat&) [with Scal = double; Mat = Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0]’ stanExports_basics_regression.h:750:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/elt_divide.hpp:61:13: required from ‘auto stan::math::elt_divide(Scal, const Mat&) [with Scal = double; Mat = Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0]’ stanExports_basics_regression.h:750:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/elt_divide.hpp:61:32: required from ‘auto stan::math::elt_divide(Scal, const Mat&) [with Scal = double; Mat = Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0]’ stanExports_basics_regression.h:750:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/elt_divide.hpp:61:13: required from ‘auto stan::math::elt_divide(Scal, const Mat&) [with Scal = int; Mat = Eigen::Matrix; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0]’ stanExports_basics_regression.h:756:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/elt_divide.hpp:61:32: required from ‘auto stan::math::elt_divide(Scal, const Mat&) [with Scal = int; Mat = Eigen::Matrix; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0]’ stanExports_basics_regression.h:756:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/elt_divide.hpp:61:22: required from ‘auto stan::math::elt_divide(Scal, const Mat&) [with Scal = int; Mat = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0]’ stanExports_basics_regression.h:757:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/elt_divide.hpp:61:13: required from ‘auto stan::math::elt_divide(Scal, const Mat&) [with Scal = int; Mat = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0]’ stanExports_basics_regression.h:757:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/elt_divide.hpp:61:32: required from ‘auto stan::math::elt_divide(Scal, const Mat&) [with Scal = int; Mat = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0]’ stanExports_basics_regression.h:757:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/add.hpp:77:13: required from ‘auto stan::math::add(Scal, const Mat&) [with Scal = double; Mat = Eigen::Matrix; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0; stan::require_all_not_st_var* = 0]’ stanExports_basics_regression.h:766:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/add.hpp:77:32: required from ‘auto stan::math::add(Scal, const Mat&) [with Scal = double; Mat = Eigen::Matrix; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0; stan::require_all_not_st_var* = 0]’ stanExports_basics_regression.h:766:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/multiply.hpp:84:12: required from ‘auto stan::math::multiply(Scal, const Mat&) [with Scal = double; Mat = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0; stan::require_all_not_st_var* = 0; stan::require_all_not_complex_t::type>* = 0]’ stanExports_basics_regression.h:779:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_linesearch.hpp:247:0: required from ‘int stan::optimization::WolfeLineSearch(FunctorType&, Scalar&, XType&, Scalar&, XType&, const XType&, const XType&, const Scalar&, const XType&, const Scalar&, const Scalar&, const Scalar&, const Scalar&, const Scalar&) [with FunctorType = ModelAdaptor; Scalar = double; XType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:209:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:34:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0, 5>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:34:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, Eigen::Matrix >, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, Eigen::Matrix >, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, Eigen::Matrix >, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, Eigen::Matrix >, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, Eigen::Matrix >, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:34:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0>, Eigen::Transpose >, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0>, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 0>, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Product, Eigen::Matrix, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Product, Eigen::Matrix, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Product, Eigen::Matrix, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Product, Eigen::Matrix, 0>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Product, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:55:0: required from ‘void stan::optimization::BFGSUpdate_HInv::search_direction(VectorT&, const VectorT&) const [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:254:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:131:53: required from ‘auto stan::math::divide(const Mat&, Scalar) [with Scalar = var_value; Mat = Eigen::Matrix, -1, 1>; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_st_var_or_arithmetic* = 0; stan::require_any_st_var* = 0]’ stanExports_basics_regression.h:204:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:717:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:134:39: required from ‘auto stan::math::divide(const Mat&, Scalar) [with Scalar = var_value; Mat = Eigen::Matrix, -1, 1>; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_st_var_or_arithmetic* = 0; stan::require_any_st_var* = 0]’ stanExports_basics_regression.h:204:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:717:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:143:58: required from ‘auto stan::math::divide(const Mat&, Scalar) [with Scalar = var_value; Mat = Eigen::Matrix, -1, 1>; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_st_var_or_arithmetic* = 0; stan::require_any_st_var* = 0]’ stanExports_basics_regression.h:204:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:717:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:143:38: required from ‘auto stan::math::divide(const Mat&, Scalar) [with Scalar = var_value; Mat = Eigen::Matrix, -1, 1>; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_st_var_or_arithmetic* = 0; stan::require_any_st_var* = 0]’ stanExports_basics_regression.h:204:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:717:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:149:72: required from ‘auto stan::math::divide(const Mat&, Scalar) [with Scalar = var_value; Mat = Eigen::Matrix, -1, 1>; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_st_var_or_arithmetic* = 0; stan::require_any_st_var* = 0]’ stanExports_basics_regression.h:204:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:717:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:149:53: required from ‘auto stan::math::divide(const Mat&, Scalar) [with Scalar = var_value; Mat = Eigen::Matrix, -1, 1>; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_st_var_or_arithmetic* = 0; stan::require_any_st_var* = 0]’ stanExports_basics_regression.h:204:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:717:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:151:51: required from ‘auto stan::math::divide(const Mat&, Scalar) [with Scalar = var_value; Mat = Eigen::Matrix, -1, 1>; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_st_var_or_arithmetic* = 0; stan::require_any_st_var* = 0]’ stanExports_basics_regression.h:204:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:717:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:66: required from ‘stan::math::value_of_rec, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&):: [with auto:1 = Eigen::ArrayWrapper, -1, 1> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_greater_or_equal.hpp:157:30: required from ‘void stan::math::check_greater_or_equal(const char*, const char*, const T_y&, const T_low&, Idxs ...) [with T_y = Eigen::Matrix, -1, 1>; T_low = int; stan::require_vector_t* = 0; stan::require_not_std_vector_vt* = 0; stan::require_stan_scalar_t* = 0; Idxs = {}]’ stanExports_basics_regression.h:726:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75: required from ‘stan::math::value_of, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&):: [with auto:11 = Eigen::ArrayWrapper, -1, 1> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:67:64: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log >(const Eigen::Array&):: [with auto:169 = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:96:69: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:102:44: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:102:52: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:106:35: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:113:49: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:113:57: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:116:54: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:85:18: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::internal::member_sum, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::internal::member_sum, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::internal::member_sum, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from ‘class Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:95:42: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::internal::member_sum, 0>, void>::apply(const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>&)::, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::internal::member_sum, 0>, void>::apply(const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>&)::, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::internal::member_sum, 0>, void>::apply(const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>&)::, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, Eigen::internal::member_sum, 0>, void>::apply(const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>&)::, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, Eigen::internal::member_sum, 0>, void>::apply(const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>&)::, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:62:23: required from ‘static auto stan::math::apply_scalar_unary::type>::value, void>::type>::apply(const T&) [with F = stan::math::lgamma_fun; T = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:72:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:95:18: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, void>::apply(const Eigen::Array&)::, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, void>::apply(const Eigen::Array&)::, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, void>::apply(const Eigen::Array&)::, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, void>::apply(const Eigen::Array&)::, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, void>::apply(const Eigen::Array&)::, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:62:23: required from ‘static auto stan::math::apply_scalar_unary::type>::value, void>::type>::apply(const T&) [with F = stan::math::lgamma_fun; T = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:72:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:96:20: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, void>::apply(const Eigen::Array&)::, const Eigen::Array >, Eigen::internal::member_sum, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, void>::apply(const Eigen::Array&)::, const Eigen::Array >, Eigen::internal::member_sum, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, void>::apply(const Eigen::Array&)::, const Eigen::Array >, Eigen::internal::member_sum, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from ‘class Eigen::PartialReduxExpr, void>::apply(const Eigen::Array&)::, const Eigen::Array >, Eigen::internal::member_sum, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:96:45: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, Eigen::internal::member_sum, 0>, void>::apply(const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>&)::, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0> >, const Eigen::PartialReduxExpr, void>::apply(const Eigen::Array&)::, const Eigen::Array >, Eigen::internal::member_sum, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, Eigen::internal::member_sum, 0>, void>::apply(const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>&)::, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0> >, const Eigen::PartialReduxExpr, void>::apply(const Eigen::Array&)::, const Eigen::Array >, Eigen::internal::member_sum, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, Eigen::internal::member_sum, 0>, void>::apply(const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>&)::, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0> >, const Eigen::PartialReduxExpr, void>::apply(const Eigen::Array&)::, const Eigen::Array >, Eigen::internal::member_sum, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, Eigen::internal::member_sum, 0>, void>::apply(const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>&)::, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0> >, const Eigen::PartialReduxExpr, void>::apply(const Eigen::Array&)::, const Eigen::Array >, Eigen::internal::member_sum, 0>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, Eigen::internal::member_sum, 0>, void>::apply(const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>&)::, const Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0> >, const Eigen::PartialReduxExpr, void>::apply(const Eigen::Array&)::, const Eigen::Array >, Eigen::internal::member_sum, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:96:12: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:101:62: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:103:71: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:106:22: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:113:28: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:113:32: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:113:58: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:62:23: required from ‘static auto stan::math::apply_scalar_unary::type>::value, void>::type>::apply(const T&) [with F = stan::math::digamma_fun; T = Eigen::Block, -1, 1, true>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:72:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:120:56: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:120:47: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::Array >, -1, 1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::Array >, -1, 1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::Array >, -1, 1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:121:30: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >, const Eigen::Block, const Eigen::Array >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >, const Eigen::Block, const Eigen::Array >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >, const Eigen::Block, const Eigen::Array >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >, const Eigen::Block, const Eigen::Array >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >, const Eigen::Block, const Eigen::Array >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:121:15: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >, const Eigen::Block, const Eigen::Array >, -1, 1, true> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >, const Eigen::Block, const Eigen::Array >, -1, 1, true> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >, const Eigen::Block, const Eigen::Array >, -1, 1, true> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >, const Eigen::Block, const Eigen::Array >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:122:25: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:57:51: required from ‘stan::math::as_array_or_scalar, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, 0, Eigen::Stride<0, 0> >&):: [with auto:13 = const Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:59:65: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:744:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:77:40: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:744:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:77:50: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:744:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:79:62: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:744:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:96:35: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:744:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:99:45: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:744:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:99:59: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:744:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75: required from ‘stan::math::value_of, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&):: [with auto:11 = Eigen::ArrayWrapper, -1, 1> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:44:68: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/inv.hpp:55:55: required from ‘stan::math::inv >(const Eigen::Array&):: [with auto:220 = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:64:56: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/square.hpp:70:54: required from ‘stan::math::square >(const Eigen::Array&):: [with auto:239 = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:67:17: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:70:40: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:74:63: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:89:39: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:89:35: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:89:62: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:96:46: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:96:51: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >&&)::::, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >&&)::::, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >&&)::::, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >&&)::::, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >&&)::::, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75: required from ‘stan::math::value_of, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >&&):: [with auto:11 = Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:67:64: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = std::vector, std::allocator > >; T_shape = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; T_inv_scale = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, void>::apply(const Eigen::Array&)::, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, void>::apply(const Eigen::Array&)::, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, void>::apply(const Eigen::Array&)::, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, void>::apply(const Eigen::Array&)::, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, void>::apply(const Eigen::Array&)::, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:62:23: required from ‘static auto stan::math::apply_scalar_unary::type>::value, void>::type>::apply(const T&) [with F = stan::math::lgamma_fun; T = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:72:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:94:23: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = std::vector, std::allocator > >; T_shape = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; T_inv_scale = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:102:44: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = std::vector, std::allocator > >; T_shape = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; T_inv_scale = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, void>::apply(const Eigen::Array&)::, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, void>::apply(const Eigen::Array&)::, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, void>::apply(const Eigen::Array&)::, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, void>::apply(const Eigen::Array&)::, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, void>::apply(const Eigen::Array&)::, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:62:23: required from ‘static auto stan::math::apply_scalar_unary::type>::value, void>::type>::apply(const T&) [with F = stan::math::digamma_fun; T = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:72:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:102:61: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = std::vector, std::allocator > >; T_shape = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; T_inv_scale = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, void>::apply(const Eigen::Array&)::, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, void>::apply(const Eigen::Array&)::, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, void>::apply(const Eigen::Array&)::, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, void>::apply(const Eigen::Array&)::, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, void>::apply(const Eigen::Array&)::, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:102:52: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = std::vector, std::allocator > >; T_shape = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; T_inv_scale = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:106:28: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = std::vector, std::allocator > >; T_shape = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; T_inv_scale = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:106:35: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = std::vector, std::allocator > >; T_shape = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; T_inv_scale = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:113:44: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = std::vector, std::allocator > >; T_shape = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; T_inv_scale = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:113:49: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = std::vector, std::allocator > >; T_shape = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; T_inv_scale = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:113:57: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = std::vector, std::allocator > >; T_shape = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; T_inv_scale = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:116:43: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = std::vector, std::allocator > >; T_shape = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; T_inv_scale = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:116:54: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = std::vector, std::allocator > >; T_shape = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; T_inv_scale = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&)::, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&)::, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&)::, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&)::, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&)::, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_binary.hpp:60:51: required from ‘stan::math::apply_scalar_binary, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&, multiply_log, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&):: >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&, multiply_log, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&)::&&):: [with auto:59 = stan::math::multiply_log, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&)::; auto:60 = const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >; auto:61 = const Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/poisson_lpmf.hpp:69:56: required from ‘stan::return_type_t stan::math::poisson_lpmf(const T_n&, const T_rate&) [with bool propto = true; T_n = std::vector; T_rate = Eigen::Matrix, -1, 1>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:775:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&)::, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array >, stan::math::multiply_log, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&):: >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&)::, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array >, stan::math::multiply_log, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&):: > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&)::, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array >, stan::math::multiply_log, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&):: > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:115:7: required from ‘class stan::math::Holder, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&)::, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array >, stan::math::multiply_log, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&):: >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:312:16: required from ‘auto stan::math::internal::make_holder_impl_construct_object(T&&, std::index_sequence, const std::tuple&) [with T = Eigen::CwiseBinaryOp, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&)::, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array >; long unsigned int ...Is = {0}; Args = {stan::math::multiply_log, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&)::}; std::index_sequence = std::integer_sequence]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:330:43: required from ‘auto stan::math::internal::make_holder_impl(const F&, std::index_sequence, Args&& ...) [with F = stan::math::apply_scalar_binary, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&, multiply_log, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&):: >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&, multiply_log, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&)::&&)::; long unsigned int ...Is = {0, 1, 2}; Args = {stan::math::multiply_log, 0, Eigen::Stride<0, 0> > >, Eigen::Array >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&)::, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&, const Eigen::Array&}; std::index_sequence = std::integer_sequence]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:353:36: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/poisson_lpmf.hpp:69:56: required from ‘stan::return_type_t stan::math::poisson_lpmf(const T_n&, const T_rate&) [with bool propto = true; T_n = std::vector; T_rate = Eigen::Matrix, -1, 1>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:775:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/poisson_lpmf.hpp:74:30: required from ‘stan::return_type_t stan::math::poisson_lpmf(const T_n&, const T_rate&) [with bool propto = true; T_n = std::vector; T_rate = Eigen::Matrix, -1, 1>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:775:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >&)::, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >&)::, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >&)::, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >&)::, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >&)::, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:62:23: required from ‘static auto stan::math::apply_scalar_unary::type>::value, void>::type>::apply(const T&) [with F = stan::math::lgamma_fun; T = Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:72:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/poisson_lpmf.hpp:74:23: required from ‘stan::return_type_t stan::math::poisson_lpmf(const T_n&, const T_rate&) [with bool propto = true; T_n = std::vector; T_rate = Eigen::Matrix, -1, 1>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:775:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/poisson_lpmf.hpp:78:39: required from ‘stan::return_type_t stan::math::poisson_lpmf(const T_n&, const T_rate&) [with bool propto = true; T_n = std::vector; T_rate = Eigen::Matrix, -1, 1>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:775:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/poisson_lpmf.hpp:78:52: required from ‘stan::return_type_t stan::math::poisson_lpmf(const T_n&, const T_rate&) [with bool propto = true; T_n = std::vector; T_rate = Eigen::Matrix, -1, 1>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:775:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:268:7: required from ‘Eigen::MapBase::ScalarWithConstIfNotLvalue& Eigen::MapBase::coeffRef(Eigen::Index) [with Derived = Eigen::Block, -1, 1, true>; ScalarWithConstIfNotLvalue = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:367:25: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:475:5: required from ‘void Eigen::internal::apply_rotation_in_the_plane(Eigen::DenseBase&, Eigen::DenseBase&, const Eigen::JacobiRotation&) [with VectorX = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; VectorY = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; OtherScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:315:40: required from ‘void Eigen::MatrixBase::applyOnTheRight(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation&) [with OtherScalar = double; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:895:24: required from ‘void Eigen::internal::tridiagonal_qr_step(RealScalar*, RealScalar*, Index, Index, Scalar*, Index) [with int StorageOrder = 0; RealScalar = double; Scalar = double; Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:548:87: required from ‘Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix; DiagType = Eigen::Matrix; SubDiagType = Eigen::Matrix; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:460:49: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:79:51: required from ‘class Eigen::internal::visitor_evaluator, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:123:17: required from ‘void Eigen::DenseBase::visit(Visitor&) const [with Visitor = Eigen::internal::min_coeff_visitor, -1, 1, false>, 0>; Derived = Eigen::Block, -1, 1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:323:14: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::minCoeff(IndexType*) const [with int NaNPropagation = 0; IndexType = long int; Derived = Eigen::Block, -1, 1, false>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:496:37: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::minCoeff(IndexType*) const [with IndexType = long int; Derived = Eigen::Block, -1, 1, false>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:563:35: required from ‘Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix; DiagType = Eigen::Matrix; SubDiagType = Eigen::Matrix; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:460:49: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:221:22: required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:74: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 1, -1, false>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 1, -1, false>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:221:22: required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:125: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1384:41: required from ‘struct Eigen::internal::evaluator_wrapper_base, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1464:8: required from ‘struct Eigen::internal::unary_evaluator, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::ArrayWrapper, -1, 1, true>, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:379:74: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1384:41: required from ‘struct Eigen::internal::evaluator_wrapper_base, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1464:8: required from ‘struct Eigen::internal::unary_evaluator, -1, 1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::ArrayWrapper, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:387:50: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:109:26: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:113:49: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:113:57: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:116:54: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:106:22: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = false; T_prob = Eigen::Matrix; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true>, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Block, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true>, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true>, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:113:32: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = false; T_prob = Eigen::Matrix; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true>, const Eigen::Block, -1, 1, true> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::Block, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:113:58: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = false; T_prob = Eigen::Matrix; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:64: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::return_type_t = double]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:77:40: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:744:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:77:50: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:744:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:57:51: required from ‘stan::math::as_array_or_scalar, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >&>(const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >&):: [with auto:13 = const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::as_array_or_scalar, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >&>(const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >&)::; Args = {const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >&}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:57:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/square.hpp:70:54: required from ‘stan::math::square, const Eigen::Array > >(const Eigen::CwiseUnaryOp, const Eigen::Array >&):: [with auto:239 = Eigen::CwiseUnaryOp, const Eigen::Array >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:70:40: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:74:63: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:87:37: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:89:39: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:89:35: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:89:62: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:96:34: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:96:46: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:96:51: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:57:51: required from ‘stan::math::as_array_or_scalar, 0, Eigen::Stride<0, 0> > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&&):: [with auto:13 = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:57:51: required from ‘stan::math::as_array_or_scalar, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >&>(const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >&):: [with auto:13 = const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::as_array_or_scalar, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >&>(const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >&)::; Args = {const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >&}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:57:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:57:51: required from ‘stan::math::as_array_or_scalar, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >&>(const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >&):: [with auto:13 = const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::as_array_or_scalar, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >&>(const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >&)::; Args = {const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >&}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:57:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log, 0, Eigen::Stride<0, 0> > > >(const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&):: [with auto:169 = Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:100:27: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = std::vector; T_shape = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; T_inv_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:102:44: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = std::vector; T_shape = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; T_inv_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseUnaryOp, void>::apply(const Eigen::Array&)::, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseUnaryOp, void>::apply(const Eigen::Array&)::, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseUnaryOp, void>::apply(const Eigen::Array&)::, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseUnaryOp, void>::apply(const Eigen::Array&)::, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseUnaryOp, void>::apply(const Eigen::Array&)::, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:102:52: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = std::vector; T_shape = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; T_inv_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:106:35: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = std::vector; T_shape = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; T_inv_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:109:26: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = std::vector; T_shape = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; T_inv_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:113:49: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = std::vector; T_shape = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; T_inv_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:113:57: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = std::vector; T_shape = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; T_inv_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:116:54: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = std::vector; T_shape = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; T_inv_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:57:51: required from ‘stan::math::as_array_or_scalar, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >&>(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >&):: [with auto:13 = const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::as_array_or_scalar, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >&>(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >&)::; Args = {const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >&}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:57:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:775:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; bool NeedToTranspose = false; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:199:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:66: required from ‘stan::math::value_of_rec, -1, 1>&>(const Eigen::Matrix, -1, 1>&):: [with auto:1 = const Eigen::Matrix, -1, 1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:78:18: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1> >::val_Op, const Eigen::Matrix, -1, -1> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1> >::val_Op, const Eigen::Matrix, -1, -1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1> >::val_Op, const Eigen::Matrix, -1, -1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, -1> >::val_Op, const Eigen::Matrix, -1, -1>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, -1> >::val_Op, const Eigen::Matrix, -1, -1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/LDLT_factor.hpp:27:42: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:77:37: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0>, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:78:20: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log, 0> > >(const Eigen::ArrayWrapper, 0> >&):: [with auto:169 = Eigen::ArrayWrapper, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:90:37: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/trace_inv_quad_form_ldlt.hpp:41:0: required from ‘stan::math::var stan::math::trace_inv_quad_form_ldlt(LDLT_factor&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::CwiseBinaryOp, double>, const Eigen::Matrix, -1, 1>, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_all_matrix_t* = 0; stan::require_any_st_var* = 0; var = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/trace_inv_quad_form_ldlt.hpp:43:0: required from ‘stan::math::var stan::math::trace_inv_quad_form_ldlt(LDLT_factor&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::CwiseBinaryOp, double>, const Eigen::Matrix, -1, 1>, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_all_matrix_t* = 0; stan::require_any_st_var* = 0; var = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 6>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, 5>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/trace_inv_quad_form_ldlt.hpp:55:0: required from ‘stan::math::var stan::math::trace_inv_quad_form_ldlt(LDLT_factor&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::CwiseBinaryOp, double>, const Eigen::Matrix, -1, 1>, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_all_matrix_t* = 0; stan::require_any_st_var* = 0; var = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/trace_inv_quad_form_ldlt.hpp:57:0: required from ‘stan::math::var stan::math::trace_inv_quad_form_ldlt(LDLT_factor&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::CwiseBinaryOp, double>, const Eigen::Matrix, -1, 1>, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_all_matrix_t* = 0; stan::require_any_st_var* = 0; var = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 6>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135:50: required from ‘stan::math::var stan::math::accumulator::type>::value, void>::type>::sum() const [with T = stan::math::var_value; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = stan::math::var_value; stan::math::var = stan::math::var_value]’ stanExports_basics_regression.h:788:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:116:13: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Func = Eigen::internal::scalar_max_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:453:45: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true>, -1, 1, false>, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:93:22: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:86: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false>, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:375:18: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointRank2Update.h:34:74: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:375:18: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointRank2Update.h:35:60: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:375:18: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointRank2Update.h:35:23: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:375:18: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/trace_inv_quad_form_ldlt.hpp:36:24: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 2>, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 2>, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 2>, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, 2>, Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, 2>, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:53:0: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:388:0: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/advi.hpp:223:0: required from ‘double stan::variational::advi::adapt_eta(Q&, int, stan::callbacks::logger&) const [with Model = model_basics_regression_namespace::model_basics_regression; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/advi.hpp:468:0: required from ‘int stan::variational::advi::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_basics_regression_namespace::model_basics_regression; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/experimental/advi/meanfield.hpp:82:0: required from ‘int stan::services::experimental::advi::meanfield(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, double, double, bool, int, int, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:900:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_positive_finite >(const char*, const char*, const Eigen::Array&)::; T = Eigen::Array; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_positive_finite.hpp:24:20: required from ‘void stan::math::check_positive_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:71:24: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67:0: required from ‘void stan::math::internal::update_adjoints(Matrix1&, const Matrix2&, const stan::math::var&) [with Matrix1 = stan::math::arena_matrix, -1, 1> >; Matrix2 = stan::math::arena_matrix >; stan::require_rev_matrix_t* = 0; stan::require_st_arithmetic* = 0; stan::math::var = stan::math::var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:91:0: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:118:28: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_positive, 0, Eigen::Stride<0, 0> > >(const char*, const char*, const Eigen::Map, 0, Eigen::Stride<0, 0> >&)::; T = Eigen::Map, 0, Eigen::Stride<0, 0> >; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_positive.hpp:29:20: required from ‘void stan::math::check_positive(const char*, const char*, const T_y&) [with T_y = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:77:19: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase, 0, Eigen::Stride<0, 0> > >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:120:43: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite, 0, Eigen::Stride<0, 0> > >(const char*, const char*, const Eigen::Map, 0, Eigen::Stride<0, 0> >&)::; T = Eigen::Map, 0, Eigen::Stride<0, 0> >; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:71:17: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase, 0, Eigen::Stride<0, 0> > >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan, -1, 1> >(const char*, const char*, const Eigen::Matrix, -1, 1>&)::; T = Eigen::Matrix, -1, 1>; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix, -1, 1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:72:18: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:634:22: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:90:37: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:510:28: required from ‘typename Eigen::internal::traits::Scalar Eigen::MatrixBase::trace() const [with Derived = Eigen::Product, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/trace_inv_quad_form_ldlt.hpp:43:0: required from ‘stan::math::var stan::math::trace_inv_quad_form_ldlt(LDLT_factor&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::CwiseBinaryOp, double>, const Eigen::Matrix, -1, 1>, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_all_matrix_t* = 0; stan::require_any_st_var* = 0; var = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:510:28: required from ‘typename Eigen::internal::traits::Scalar Eigen::MatrixBase::trace() const [with Derived = Eigen::Product, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/trace_inv_quad_form_ldlt.hpp:57:0: required from ‘stan::math::var stan::math::trace_inv_quad_form_ldlt(LDLT_factor&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::CwiseBinaryOp, double>, const Eigen::Matrix, -1, 1>, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_all_matrix_t* = 0; stan::require_any_st_var* = 0; var = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Array&)::; T = Eigen::Array; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:62:16: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:744:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite, 0, Eigen::Stride<0, 0> > > >(const char*, const char*, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&)::; T = Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:63:15: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:744:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase, 0, Eigen::Stride<0, 0> > > >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_nonnegative >(const char*, const char*, const Eigen::Array&)::; T = Eigen::Array; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_nonnegative.hpp:26:20: required from ‘void stan::math::check_nonnegative(const char*, const char*, const T_y&) [with T_y = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:46:20: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Array&)::; T = Eigen::Array; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:47:15: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite, -1, 1> >(const char*, const char*, const Eigen::Matrix, -1, 1>&)::; T = Eigen::Matrix, -1, 1>; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix, -1, 1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/neg_binomial_2_log_lpmf.hpp:46:15: required from ‘stan::return_type_t stan::math::neg_binomial_2_log_lpmf(const T_n&, const T_log_location&, const T_precision&) [with bool propto = true; T_n = std::vector; T_log_location = Eigen::Matrix, -1, 1>; T_precision = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:762:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_positive_finite, -1, 1> >(const char*, const char*, const Eigen::Matrix, -1, 1>&)::; T = Eigen::Matrix, -1, 1>; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_positive_finite.hpp:24:20: required from ‘void stan::math::check_positive_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix, -1, 1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/neg_binomial_2_log_lpmf.hpp:47:24: required from ‘stan::return_type_t stan::math::neg_binomial_2_log_lpmf(const T_n&, const T_log_location&, const T_precision&) [with bool propto = true; T_n = std::vector; T_log_location = Eigen::Matrix, -1, 1>; T_precision = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:762:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_nonnegative, 0, Eigen::Stride<0, 0> > > >(const char*, const char*, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&)::; T = Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_nonnegative.hpp:26:20: required from ‘void stan::math::check_nonnegative(const char*, const char*, const T_y&) [with T_y = Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/poisson_lpmf.hpp:45:20: required from ‘stan::return_type_t stan::math::poisson_lpmf(const T_n&, const T_rate&) [with bool propto = true; T_n = std::vector; T_rate = Eigen::Matrix, -1, 1>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:775:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase, 0, Eigen::Stride<0, 0> > > >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::Matrix >, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Matrix >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, const Eigen::Matrix >, 1, -1, false>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, const Eigen::Matrix >, 1, -1, false>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:114:1: required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, const Eigen::Matrix >, 1, -1, false>; ResultType = double; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:21: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = const Eigen::CwiseUnaryOp, const Eigen::Matrix >; MemberOp = Eigen::internal::member_sum; int Direction = 1; Scalar = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:268:34: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; Func = Eigen::internal::scalar_max_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix >, Eigen::internal::member_sum, 1> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:49: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block >, -1, 1, true>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block >, -1, 1, true>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block >, -1, 1, true>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::Block >, -1, 1, true>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::Block >, -1, 1, true>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::Block >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45: required from ‘struct Eigen::internal::generic_product_impl, const Eigen::Block >, -1, 1, true>, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:479:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 1, -1, true>, Eigen::Transpose >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 1, -1, true>, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 1, -1, true>, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from ‘struct Eigen::internal::generic_product_impl, 1, -1, true>, Eigen::Transpose >, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:486:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:78:71: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, 1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:125: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:125: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 0>, -1, 1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 0>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:79:51: required from ‘class Eigen::internal::visitor_evaluator, const Eigen::Block, 0>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:123:17: required from ‘void Eigen::DenseBase::visit(Visitor&) const [with Visitor = Eigen::internal::max_coeff_visitor, const Eigen::Block, 0>, -1, 1, false> >, 0>; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 0>, -1, 1, false> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:374:14: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:325:54: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from ‘struct Eigen::internal::generic_product_impl, -1, -1, false>, Eigen::Block, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42: required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/NoAlias.h:59:31: required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; ExpressionType = Eigen::Block, -1, 1, false>; StorageBase = Eigen::MatrixBase]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_positive_finite > >(const char*, const char*, const Eigen::ArrayWrapper >&)::; T = Eigen::ArrayWrapper >; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_positive_finite.hpp:24:20: required from ‘void stan::math::check_positive_finite(const char*, const char*, const T_y&) [with T_y = Eigen::ArrayWrapper >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:71:24: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase > >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/mdivide_left_ldlt.hpp:37:24: required from ‘Eigen::Matrix::type, -1, EigMat::ColsAtCompileTime> stan::math::mdivide_left_ldlt(LDLT_factor&, const EigMat&) [with T = Eigen::Matrix; EigMat = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_eigen_t* = 0; stan::require_all_not_st_var* = 0; stan::require_any_not_t::type>, stan::is_fvar::type, void> >* = 0; typename stan::return_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/trace_inv_quad_form_ldlt.hpp:36:42: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan > >(const char*, const char*, const Eigen::ArrayWrapper >&)::; T = Eigen::ArrayWrapper >; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::ArrayWrapper >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:62:16: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:744:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase > >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_nonnegative > >(const char*, const char*, const Eigen::ArrayWrapper >&)::; T = Eigen::ArrayWrapper >; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_nonnegative.hpp:26:20: required from ‘void stan::math::check_nonnegative(const char*, const char*, const T_y&) [with T_y = Eigen::ArrayWrapper >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:46:20: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase > >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite > >(const char*, const char*, const Eigen::ArrayWrapper >&)::; T = Eigen::ArrayWrapper >; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::ArrayWrapper >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:47:15: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase > >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_positive_finite, 0, Eigen::Stride<0, 0> > > >(const char*, const char*, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&)::; T = Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_positive_finite.hpp:24:20: required from ‘void stan::math::check_positive_finite(const char*, const char*, const T_y&) [with T_y = Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:71:24: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = std::vector; T_shape = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; T_inv_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase, 0, Eigen::Stride<0, 0> > > >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_positive_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_positive_finite.hpp:24:20: required from ‘void stan::math::check_positive_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/neg_binomial_2_log_lpmf.hpp:47:24: required from ‘stan::return_type_t stan::math::neg_binomial_2_log_lpmf(const T_n&, const T_log_location&, const T_precision&) [with bool propto = false; T_n = std::vector; T_log_location = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; T_precision = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:762:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:142:7: required from ‘Eigen::DenseCoeffsBase::CoeffReturnType Eigen::DenseCoeffsBase::coeff(Eigen::Index) const [with Derived = Eigen::Block, 0>, -1, 1, false>; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:182:19: required from ‘Eigen::DenseCoeffsBase::CoeffReturnType Eigen::DenseCoeffsBase::operator()(Eigen::Index) const [with Derived = Eigen::Block, 0>, -1, 1, false>; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_ldlt_factor.hpp:32:48: required from ‘void stan::math::check_ldlt_factor(const char*, const char*, LDLT_factor&) [with T = Eigen::Matrix, -1, -1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:78:20: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; SrcXprType = Eigen::Block, 1, -1, false>; Functor = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; SrcXprType = Eigen::Block, 1, -1, false>; Functor = Eigen::internal::assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, 1, -1, false>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, 1, -1, false>; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, 1, -1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from ‘Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:72:0: required from ‘int stan::services::standalone_generate(const Model&, const Eigen::MatrixXd&, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; Eigen::MatrixXd = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1253:0: required from ‘SEXPREC* rstan::stan_fit::standalone_gqs(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:30:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 16, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 16, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 16, Eigen::Stride<0, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 16, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 16, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 16, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883:25: required from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; OtherDerived = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:332:31: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850:41: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Func = add_assign_op; typename enable_if::value, void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from ‘Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:28:39: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:280:48: required from ‘void Eigen::internal::outer_product_selector_run(Dst&, const Lhs&, const Rhs&, const Func&, const false_type&) [with Dst = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Rhs = Eigen::Transpose >; Func = generic_product_impl, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, Eigen::DenseShape, Eigen::DenseShape, 5>::set]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:317:41: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883:25: required from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; OtherDerived = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:332:31: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850:41: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Func = add_assign_op; typename enable_if::value, void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from ‘Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:28:39: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose >, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Transpose >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Transpose >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose >, 1, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Transpose >, 1, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Transpose >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:462:68: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, true>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, true>, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, true>, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, true>, 1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:333: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:306:38: required from ‘struct Eigen::internal::general_matrix_vector_product, 1, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:347:132: required from ‘static void Eigen::internal::gemv_dense_selector<2, 1, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 52 | unpacket_traits<_RhsPacket>::vectorizable && | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1 | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 59 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 60 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 61 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:310:42: required from ‘struct Eigen::internal::general_matrix_vector_product, 1, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:347:132: required from ‘static void Eigen::internal::gemv_dense_selector<2, 1, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 52 | unpacket_traits<_RhsPacket>::vectorizable && | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1 | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 59 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 60 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 61 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:314:45: required from ‘struct Eigen::internal::general_matrix_vector_product, 1, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:347:132: required from ‘static void Eigen::internal::gemv_dense_selector<2, 1, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 52 | unpacket_traits<_RhsPacket>::vectorizable && | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1 | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 59 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 60 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 61 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:106:38: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Block, -1, 1, true>; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Block, -1, 1, true>; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, -1, 1, true> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:120:43: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1, 6>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:29:8: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1626:36: required from ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:65:8: required from ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1, 6>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:29:8: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1626:36: required from ‘struct Eigen::internal::evaluator, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:65:8: required from ‘struct Eigen::internal::evaluator, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:26: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Functor = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Functor = Eigen::internal::assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Map, 0, Eigen::Stride<0, 0> >; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Map, 0, Eigen::Stride<0, 0> >; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CommaInitializer.h:159:10: required from ‘Eigen::CommaInitializer Eigen::DenseBase::operator<<(const Eigen::DenseBase&) [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/append_row.hpp:102:10: required from ‘Eigen::Matrix::type, -1, 1> stan::math::append_row(const ColVec&, const Scal&) [with ColVec = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scal = double; stan::require_t >* = 0; stan::require_stan_scalar_t* = 0; typename stan::return_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:29:31: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, true> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block >, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:221:28: required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:74: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:54: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Block, 1, -1, false>; Rhs = Eigen::Block, -1, 1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:359:56: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:106:38: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = false; T_prob = Eigen::Matrix; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix, const Eigen::Matrix > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; bool NeedToTranspose = false; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:199:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::Block >, -1, 1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::Block >, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::Block >, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::Block >, -1, 1, false>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::Block >, -1, 1, false>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::Block >, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval >, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45: required from ‘struct Eigen::internal::generic_product_impl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::Block >, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:479:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Transpose >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:113:15: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from ‘struct Eigen::internal::generic_product_impl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Transpose >, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:486:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:106:16: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1384:41: required from ‘struct Eigen::internal::evaluator_wrapper_base, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1452:8: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:113:11: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Array, const Eigen::Array > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:82:38: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:744:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:74:44: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Array >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Array >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Array > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseUnaryOp, const Eigen::Array >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:76:16: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Array; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Array; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Array; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Array; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::Array; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:79:16: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:106:16: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = std::vector, std::allocator > >; T_shape = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; T_inv_scale = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 1, -1, true>; U = Eigen::Block >, -1, 1, true>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, true> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, true>, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 1, -1, true>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 1, -1, true>, 1, -1, true>; U = Eigen::Block >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false> >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:166:45: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:369:35: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, 1, false>; U = Eigen::Block, -1, 1, true>, -1, 1, false>; bool NeedToTranspose = false; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:86: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, 1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false>, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:109:16: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:734:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/trace_inv_quad_form_ldlt.hpp:36:53: required from ‘stan::return_type_t stan::math::trace_inv_quad_form_ldlt(LDLT_factor&, const EigMat2&) [with T = Eigen::Matrix; EigMat2 = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; = void; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::return_type_t = double]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:74:44: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::Array > >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:100:16: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = std::vector; T_shape = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; T_inv_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:106:16: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = std::vector; T_shape = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; T_inv_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:109:16: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = std::vector; T_shape = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; T_inv_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:755:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose >, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Transpose >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Transpose >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose >, 1, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Transpose >, 1, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Transpose >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:469:72: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Product, Eigen::Transpose >, 1> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Product, Eigen::Transpose >, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Product, Eigen::Transpose >, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Product, Eigen::Transpose >, 1>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Product, Eigen::Transpose >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:469:55: required from ‘static void Eigen::internal::generic_product_impl::eval_dynamic_impl(Dst&, const LhsT&, const RhsT&, const Func&, const Scalar&, Eigen::internal::true_type) [with Dst = Eigen::Matrix; LhsT = Eigen::Matrix; RhsT = Eigen::Transpose >; Func = Eigen::internal::assign_op; Scalar = double; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:446:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, false>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, false>, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:43: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::Array >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Array >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >, const Eigen::Block, const Eigen::Array >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >, const Eigen::Block, const Eigen::Array >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1384:41: required from ‘struct Eigen::internal::evaluator_wrapper_base, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >, const Eigen::Block, const Eigen::Array >, -1, 1, true> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1452:8: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, -1, 1, true>, void>::apply(const Eigen::Block, -1, 1, true>&)::, const Eigen::Block, -1, 1, true> > >, const Eigen::Block, const Eigen::Array >, -1, 1, true> > >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:120:11: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:78:71: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 2, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 2, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 2, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:369:35: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:375:18: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator >, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:296:40: required from ‘static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; Dest = Eigen::Block, -1, 1, false>; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Block, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true>, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1384:41: required from ‘struct Eigen::internal::evaluator_wrapper_base, const Eigen::Block, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1452:8: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, -1, 1, true>, const Eigen::Block, -1, 1, true> > >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43: required from ‘static void Eigen::internal::gemv_dense_selector<1, StorageOrder, BlasCompatible>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>; Rhs = Eigen::Transpose >; Dest = Eigen::Block, 1, -1, false>; int StorageOrder = 1; bool BlasCompatible = true; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, void>::apply(const Eigen::Array&)::, const Eigen::Array >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, void>::apply(const Eigen::Array&)::, const Eigen::Array >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, void>::apply(const Eigen::Array&)::, const Eigen::Array >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, void>::apply(const Eigen::Array&)::, const Eigen::Array >, -1, 1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, void>::apply(const Eigen::Array&)::, const Eigen::Array >, -1, 1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, void>::apply(const Eigen::Array&)::, const Eigen::Array >, -1, 1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:72: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:97:19: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, true>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 1, -1, true>, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:31: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator > >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_)>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_concepts.hpp:114:7: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::Convertible]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_concepts.hpp:114:7: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator > >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_)>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:152:13: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::Convertible]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:152:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:278:9: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:278:9: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:278:9: required from ‘struct boost::SinglePassRangeConcept > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > > >)>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/algorithm/equal.hpp:174:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:284:9: required from ‘struct boost::SinglePassRangeConcept > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > > >)>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/algorithm/equal.hpp:174:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept > > >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::SinglePassRangeConcept > > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/algorithm/equal.hpp:174:13: required from ‘bool boost::range::equal(const SinglePassRange1&, const SinglePassRange2&) [with SinglePassRange1 = boost::iterator_range<__gnu_cxx::__normal_iterator > >; SinglePassRange2 = boost::iterator_range<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/iterator_range_core.hpp:644:32: required from ‘bool boost::operator==(const iterator_range&, const iterator_range&) [with Iterator1T = __gnu_cxx::__normal_iterator >; Iterator2T = __gnu_cxx::__normal_iterator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/find_iterator.hpp:359:32: required from ‘bool boost::algorithm::split_iterator::equal(const boost::algorithm::split_iterator&) const [with IteratorT = __gnu_cxx::__normal_iterator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:649:26: required from ‘static bool boost::iterators::iterator_core_access::equal(const Facade1&, const Facade2&, mpl_::true_) [with Facade1 = boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >; Facade2 = boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >; mpl_::true_ = mpl_::bool_]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:981:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator==(const iterator_facade&, const iterator_facade&) [with Derived1 = boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >; V1 = const boost::iterator_range<__gnu_cxx::__normal_iterator > >; TC1 = forward_traversal_tag; Reference1 = const boost::iterator_range<__gnu_cxx::__normal_iterator > >&; Difference1 = long int; Derived2 = boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >; V2 = const boost::iterator_range<__gnu_cxx::__normal_iterator > >; TC2 = forward_traversal_tag; Reference2 = const boost::iterator_range<__gnu_cxx::__normal_iterator > >&; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_adaptor.hpp:305:29: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = const boost::iterator_range<__gnu_cxx::__normal_iterator > >]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:74: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = false; Lhs = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:337: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In instantiation of ‘static void Eigen::internal::selfadjoint_matrix_vector_product::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7: required from ‘static void Eigen::internal::selfadjoint_product_impl::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:805:109: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; int ProductTag = 7; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:369:35: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:62:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 62 | conj_helper::IsComplex && EIGEN_LOGICAL_XOR(ConjugateLhs, IsRowMajor), ConjugateRhs> pcj0; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:62:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:63:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 63 | conj_helper::IsComplex && EIGEN_LOGICAL_XOR(ConjugateLhs, !IsRowMajor), ConjugateRhs> pcj1; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:63:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, -1, false>, 1, -1, false>; U = Eigen::Block, -1, 1, false>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>; U = Eigen::Block >, -1, 1, false>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true>; U = Eigen::Block >, -1, 1, false>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true>; U = Eigen::Block >, -1, 1, false>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:506:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘struct Eigen::internal::gemm_pack_rhs, 4, 1, false, false>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:81:75: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 0; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 1; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:230:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:114:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor, Eigen::Matrix, Eigen::Transpose >, Eigen::Matrix, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:509:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2504:50: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2504 | typedef typename unpacket_traits::half HalfPacket; | ^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2505:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2505 | typedef typename unpacket_traits::half>::half QuarterPacket; | ^~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2505:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2508:56: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2508 | HalfPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2508:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2509 | QuarterPacketSize = unpacket_traits::size}; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:332:45: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:332:58: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:332:45: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:37: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 6; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1632:27: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:52: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 6; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1632:27: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:37: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 6; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1632:27: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:52: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 6; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1632:27: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:52: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; int ProductTag = 8; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Matrix; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Transpose >; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654:63: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::CopyConstructible::~CopyConstructible() [with TT = __gnu_cxx::__normal_iterator >]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:167:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 167 | BOOST_CONCEPT_USAGE(CopyConstructible) { | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::IncrementableIteratorConcept::~IncrementableIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:136:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::EqualityComparable::~EqualityComparable() [with TT = __gnu_cxx::__normal_iterator >]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:233:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 233 | BOOST_CONCEPT_USAGE(EqualityComparable) { | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept > > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:284:9: required from ‘struct boost::SinglePassRangeConcept > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = const boost::iterator_range<__gnu_cxx::__normal_iterator > >]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:303:32: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:166: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h: In instantiation of ‘Index Eigen::internal::first_default_aligned(const Scalar*, Index) [with Scalar = double; Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:89:68: required from ‘static void Eigen::internal::selfadjoint_matrix_vector_product::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7: required from ‘static void Eigen::internal::selfadjoint_product_impl::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:805:109: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; int ProductTag = 7; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:369:35: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:500:60: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 500 | return first_aligned::alignment>(array, size); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:27: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:170:53: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0, 5>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:170:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:41: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:131:25: required from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, -1, false>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:132:29: required from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, -1, false>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 5>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:132:41: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block >, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>; Derived = Eigen::Block >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:332:31: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850:41: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>; Func = assign_op; typename enable_if::value, void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:779:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 1, -1, false>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:332:31: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850:41: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>; Func = assign_op; typename enable_if::value, void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:779:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int Pack1 = 4; int Pack2 = 2; Packet = __vector(2) double; bool Conjugate = false; bool PanelMode = false]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:184:17: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 0; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 1; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:230:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:114:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor, Eigen::Matrix, Eigen::Transpose >, Eigen::Matrix, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:509:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2100:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2100 | typedef typename unpacket_traits::half>::half QuarterPacket; | ^~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2102:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2102 | HalfPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2103 | QuarterPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:328:36: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, -1, false>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, -1, false>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:328:36: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> > >, 1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:70: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:577:26: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:90:37: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:610:38: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:90:37: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 1, -1, true>; U = Eigen::Block >, -1, 1, true>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block >, -1, 1, true>, -1, 1, true>; Derived = Eigen::Block, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 1, -1, true>, 1, -1, true>; U = Eigen::Block >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block >, -1, 1, true>; Derived = Eigen::Block, 1, -1, true>, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = true]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:346:25: required from ‘static void Eigen::internal::product_triangular_matrix_matrix::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 1; int LhsStorageOrder = 1; bool ConjugateLhs = false; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = false; Lhs = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>; int ProductTag = 8; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>; Derived = Eigen::internal::generic_product_impl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, Eigen::DenseShape, Eigen::TriangularShape, 8>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>; Derived = Eigen::internal::generic_product_impl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, Eigen::DenseShape, Eigen::TriangularShape, 8>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2459:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2459 | PacketBlock kernel; | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:96: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 2>, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 2>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 2>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 2>, Eigen::Matrix, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 2>, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 2>, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:101:66: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1>, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base >, 1>, Eigen::Matrix, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl >, 1>, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, 1>, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:102:66: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 5>, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 5>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 5>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, 5>, Eigen::Matrix, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false>, 5>, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 2, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:577:26: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, Eigen::Matrix, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >, Eigen::Matrix, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >, Eigen::Matrix, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base > >, Eigen::Matrix, 2, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl > >, Eigen::Matrix, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product > >, Eigen::Matrix, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:610:38: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, false>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘struct Eigen::internal::gemm_pack_rhs, 4, 1, false, true>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverMatrix.h:233:85: required from ‘static void Eigen::internal::triangular_solve_matrix::run(Index, Index, const Scalar*, Index, Scalar*, Index, Index, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 2; bool Conjugate = false; int TriStorageOrder = 1; int OtherInnerStride = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; int Side = 2; int Mode = 2]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 2; OtherDerived = Eigen::Block, -1, -1, false>; _MatrixType = const Eigen::Transpose, -1, -1, false> >; unsigned int _Mode = 2]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:364:96: required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:408:68: required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:456:42: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2504:50: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2504 | typedef typename unpacket_traits::half HalfPacket; | ^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2505:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2505 | typedef typename unpacket_traits::half>::half QuarterPacket; | ^~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2505:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2508:56: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2508 | HalfPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2508:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2509 | QuarterPacketSize = unpacket_traits::size}; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, void>::apply(const Eigen::Array&)::, const Eigen::Array >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, void>::apply(const Eigen::Array&)::, const Eigen::Array >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, void>::apply(const Eigen::Array&)::, const Eigen::Array >, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, void>::apply(const Eigen::Array&)::, const Eigen::Array >, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:114:1: required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, void>::apply(const Eigen::Array&)::, const Eigen::Array >, -1, 1, true>; ResultType = double; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:21: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = Eigen::CwiseUnaryOp, void>::apply(const Eigen::Array&)::, const Eigen::Array >; MemberOp = Eigen::internal::member_sum; int Direction = 0; Scalar = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:177:17: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:97:19: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = true; Lhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, -1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = true; Lhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Diagonal, 0>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Diagonal, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:303:42: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, true>, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, 1, true>, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:63:90: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:63:57: required from ‘void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:64:57: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:73:50: required from ‘void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:67: required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, 1, 1, false>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:599:18: required from ‘void Eigen::LDLT::_solve_impl_transposed(const RhsType&, DstType&) const [with bool Conjugate = true; RhsType = Eigen::Matrix; DstType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:569:31: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, const Eigen::Block >, -1, 1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, const Eigen::Block >, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, const Eigen::Block >, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0>, const Eigen::Block >, -1, 1, false>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0>, const Eigen::Block >, -1, 1, false>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 0>, const Eigen::Block >, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Transpose >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, Eigen::Matrix, 0>, 1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, Eigen::Matrix, 0>, 1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, Eigen::Matrix, 0>, 1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:113:15: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, Eigen::Matrix, 0>, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, Eigen::Matrix, 0>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from ‘struct Eigen::internal::generic_product_impl, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Transpose >, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:486:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Product, Eigen::Matrix, 0>; Rhs = Eigen::Transpose >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, Eigen::Matrix, 0>; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, -1, -1, false>, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from ‘struct Eigen::internal::generic_product_impl, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42: required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Transpose, -1, -1, false>, 1, -1, false> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, 1, false>; Src = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/NoAlias.h:59:31: required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, 1, false>; StorageBase = Eigen::MatrixBase]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:332:38: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int Pack1 = 4; int Pack2 = 2; Packet = __vector(2) double; bool Conjugate = false; bool PanelMode = true]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverMatrix.h:319:27: required from ‘static void Eigen::internal::triangular_solve_matrix::run(Index, Index, const Scalar*, Index, Scalar*, Index, Index, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 2; bool Conjugate = false; int TriStorageOrder = 1; int OtherInnerStride = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; int Side = 2; int Mode = 2]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 2; OtherDerived = Eigen::Block, -1, -1, false>; _MatrixType = const Eigen::Transpose, -1, -1, false> >; unsigned int _Mode = 2]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:364:96: required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:408:68: required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:456:42: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2100:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2100 | typedef typename unpacket_traits::half>::half QuarterPacket; | ^~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2102:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2102 | HalfPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2103 | QuarterPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> > >, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 0, Eigen::Stride<0, 0> > >, 1, -1, true>; U = Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 0, Eigen::Stride<0, 0> > >, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:48:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:577:26: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, 1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, 1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:610:38: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, 2, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:577:26: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 2; bool LhsIsTriangular = false; Lhs = Eigen::Matrix; Rhs = const Eigen::Transpose >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 2; bool LhsIsTriangular = false; Lhs = Eigen::Matrix; Rhs = const Eigen::Transpose >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:150:68: required from ‘static void Eigen::internal::product_triangular_matrix_matrix::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 1; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 1; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = true; Lhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:32: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:179:81: required from ‘class Eigen::DenseBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:32: required from ‘static void Eigen::internal::product_triangular_matrix_matrix::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 1; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 1; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = true; Lhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45: required from ‘struct Eigen::internal::generic_product_impl, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/NoAlias.h:43:31: required from ‘ExpressionType& Eigen::NoAlias::operator=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; ExpressionType = Eigen::Map, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:52: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; int ProductTag = 8; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Matrix; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Transpose >; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:769:69: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, Eigen::Transpose >, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, Eigen::Transpose >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, Eigen::Transpose >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0>, Eigen::Transpose >, 1, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0>, Eigen::Transpose >, 1, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 0>, Eigen::Transpose >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:462:68: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:444:18: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:43: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, 1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:38:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:70: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:43: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:303:32: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:75: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; int ProductTag = 8; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Matrix; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Transpose >; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654:63: required from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator >; SrcEvaluatorTypeT = Eigen::internal::evaluator, Eigen::Transpose >, 1> >; Functor = Eigen::internal::assign_op; int Version = 1; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:668:16: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>; Derived = Eigen::Block, -1, -1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Derived = Eigen::Block, -1, -1, true>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:32: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:142:7: required from ‘Eigen::DenseCoeffsBase::CoeffReturnType Eigen::DenseCoeffsBase::coeff(Eigen::Index) const [with Derived = Eigen::Block, -1, 1, false>; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:182:19: required from ‘Eigen::DenseCoeffsBase::CoeffReturnType Eigen::DenseCoeffsBase::operator()(Eigen::Index) const [with Derived = Eigen::Block, -1, 1, false>; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:63:53: required from ‘void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from ‘void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from ‘void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:320:29: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28: required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, -1, -1, false>, -1, 1, false>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:333:21: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::OuterStride<> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:39:18: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, 1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:57: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:72: required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 2; bool Conjugate = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:366:52: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:366:43: required from ‘static void Eigen::internal::gemv_dense_selector<2, 0, false>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::CwiseUnaryOp, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; Dest = Eigen::Matrix; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Block, -1, 1, true>; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Block, -1, 1, true>; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, -1, 1, true> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:114:1: required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, -1, 1, true>; ResultType = double; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:21: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = Eigen::Array; MemberOp = Eigen::internal::member_sum; int Direction = 0; Scalar = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:177:17: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:97:19: required from ‘stan::return_type_t stan::math::dirichlet_lpdf(const T_prob&, const T_prior_size&) [with bool propto = true; T_prob = Eigen::Matrix, -1, 1>; T_prior_size = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression.h:736:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:151:29: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Diagonal, 0>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Diagonal, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:42: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block, -1, -1, false>, -1, 1, true>; Functor = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block, -1, -1, false>, -1, 1, true>; Functor = Eigen::internal::add_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, -1, -1, false>, -1, 1, true>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, -1, -1, false>, -1, 1, true>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from ‘Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, -1, -1, false>, -1, 1, true>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:168:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::OuterStride<> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:97:18: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:125:66: required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 5; bool Conjugate = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, Eigen::Matrix, 0>, 1, -1, false>; U = Eigen::Block >, -1, 1, false>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, Eigen::Matrix, 0>, 1, -1, false>; U = Eigen::Block >, -1, 1, false>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true>; U = Eigen::Block >, -1, 1, false>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true>; U = Eigen::Block >, -1, 1, false>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false> >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false> >, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, false>, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, -1, false>, 1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 1, -1, false> >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, 1, -1, false> >, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:38:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>; U = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:38:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>; U = Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false>; U = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false>; U = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = true]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverMatrix.h:155:19: required from ‘static void Eigen::internal::triangular_solve_matrix::run(Index, Index, const Scalar*, Index, Scalar*, Index, Index, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 5; bool Conjugate = false; int TriStorageOrder = 0; int OtherInnerStride = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Matrix; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Side = 1; int Mode = 5]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = const Eigen::Matrix; unsigned int _Mode = 5]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:522:37: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = const Eigen::Matrix; unsigned int _Mode = 5]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:581:60: required from ‘void Eigen::LDLT::_solve_impl_transposed(const RhsType&, DstType&) const [with bool Conjugate = true; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; DstType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:569:31: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:90:37: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2459:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2459 | PacketBlock kernel; | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28: required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:599:18: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:90:37: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/indexing/access_helpers.hpp:92:0: required from ‘void stan::model::internal::assign_impl(T1&&, T2&&, const char*) [with T1 = Eigen::Matrix&; T2 = Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0>; stan::require_all_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/indexing/assign.hpp:60:0: required from ‘void stan::model::assign(T&&, U&&, const char*) [with T = Eigen::Matrix&; U = Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0>; stan::require_t::type&, typename std::decay<_Tp2>::type> >* = 0; stan::require_all_not_t, internal::is_tuple >* = 0]’ stanExports_basics_regression.h:901:0: required from ‘void model_basics_regression_namespace::model_basics_regression::write_array_impl(RNG&, VecR&, VecI&, VecVar&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; VecR = std::vector; VecI = std::vector; VecVar = std::vector; stan::require_vector_like_vt* = 0; stan::require_vector_like_vt* = 0; stan::require_vector_vt* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1401:0: required from ‘void model_basics_regression_namespace::model_basics_regression::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1105:0: required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:301:29: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false>, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false> >, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false> >, 1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, -1, false>, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28: required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, 1, 1, false>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:599:18: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 0, Eigen::Stride<0, 0> > >, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>; Derived = Eigen::Block, 0, Eigen::Stride<0, 0> > >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:48:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>; Derived = Eigen::Block, -1, -1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false>, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:26: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, 1, false> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >; Functor = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >; Functor = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >; Functor = Eigen::internal::add_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, -1, false>, 1, -1, false>; U = Eigen::Block, 1, -1, false> >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, -1, -1, false>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, -1, false>, -1, -1, false>, 1, -1, false>; U = Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:38:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28: required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:599:18: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true>; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true>; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true>; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true>; Derived = Eigen::Block, -1, -1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, -1, false>, -1, -1, false>, 1, -1, false>; U = Eigen::Block, -1, 1, false>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 1, -1, true> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, 1, false> >, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, 1, false> >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, 1, false> >, 1, -1, true>; U = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block, -1, -1, false>; Rhs = Eigen::Matrix; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:127: required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 2; bool Conjugate = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Transpose >; Rhs = Eigen::Matrix; int Side = 1; int Mode = 2]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, true>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false>, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:32: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:48: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, 1, -1, true>, 1, -1, false>; int Mode = 5; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = const Eigen::Block, -1, -1, false>, -1, -1, false>; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >; Functor = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >; Functor = Eigen::internal::add_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from ‘Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >; Derived = Eigen::Block, -1, 1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:296:25: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::Block, -1, 1, true>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::Block, -1, 1, true>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::Block, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45: required from ‘struct Eigen::internal::generic_product_impl, const Eigen::Block, -1, 1, true>, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:479:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 1, -1, false>, Eigen::Matrix, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 1, -1, false>, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 1, -1, false>, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, -1, false>, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_namespace::model_basics_regression; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >; Functor = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >; Functor = Eigen::internal::add_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Map, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression.h:700:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false> >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, 1, false> >, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false> >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false> >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:506:13: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true>, 1, -1, false> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true>, 1, -1, false> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 24 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:341:54: required from ‘static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 6; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, -1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false> >, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false> >, -1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 6; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 1, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 1, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:462:68: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true>, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false>, 1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > >; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > >; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > >; Derived = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:305:153: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::InnerStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::InnerStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::InnerStride<> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:137:106: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:137:77: required from ‘static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:32: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, 1, false> >, 1, -1, true>; U = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; Derived = Eigen::Block, -1, 1, false> >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 1, -1, false>; U = Eigen::Block, -1, 1, true>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, true> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, false>, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false>, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false>, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false>, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false>, 1, -1, true> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false>, 1, -1, true> >, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 1, -1, false>, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 24 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:151:29: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Derived = Eigen::Block, -1, -1, false>, -1, -1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Derived = Eigen::Block, -1, -1, false>, -1, -1, true>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:32: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 25 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 2; bool LhsIsTriangular = true; Lhs = Eigen::Matrix; Rhs = Eigen::Matrix; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, -1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 25 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose >; Rhs = Eigen::Matrix; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::Block, -1, 1, true>; Functor = swap_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::Block, -1, 1, true>; Functor = Eigen::internal::swap_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::Block, -1, 1, true>; Func = swap_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::Block, -1, 1, true>; Func = swap_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:424:22: required from ‘void Eigen::DenseBase::swap(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; Derived = Eigen::Block, -1, 1, true>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:1129:51: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 1, -1, false>, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, false>, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 25 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; SrcXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Functor = swap_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; SrcXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Functor = Eigen::internal::swap_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Src = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Func = swap_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Src = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Func = swap_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:424:22: required from ‘void Eigen::DenseBase::swap(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Derived = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:1129:51: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression.h:741:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1412:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_namespace::model_basics_regression; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:137:114: required from ‘static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: required from ‘static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: [ skipping 37 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 35 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, false> >, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Derived = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:341:27: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Derived = Eigen::Block, -1, -1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false> >, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false> >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:52: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix; Rhs = Eigen::Matrix; int ProductTag = 8; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Matrix; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654:63: [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_namespace::model_basics_regression; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_namespace::model_basics_regression; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 26 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 26 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: required from ‘class Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/sum.hpp:32:18: required from ‘stan::math::sum > >(const std::vector, arena_allocator > >&):: mutable [with auto:446 = stan::math::internal::callback_vari > >(const std::vector, arena_allocator > >&):: >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21:43: required from ‘void stan::math::internal::callback_vari::chain() [with T = double; F = stan::math::sum > >(const std::vector, arena_allocator > >&)::]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21:15: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/nuts/base_nuts.hpp:175:0: required from ‘stan::mcmc::sample stan::mcmc::base_nuts::transition(stan::mcmc::sample&, stan::callbacks::logger&) [with Model = model_basics_regression_namespace::model_basics_regression; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/nuts/base_nuts.hpp:78:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; bool NeedToTranspose = false; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:0: required from ‘double stan::mcmc::diag_e_metric::T(stan::mcmc::diag_e_point&) [with Model = model_basics_regression_namespace::model_basics_regression; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:20:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:70:40: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = false; VecR = Eigen::Matrix; VecI = Eigen::Matrix; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1407:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(Eigen::Matrix&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:115:0: required from ‘double stan::model::model_base_crtp::log_prob_propto(Eigen::VectorXd&, std::ostream*) const [with M = model_basics_regression_namespace::model_basics_regression; Eigen::VectorXd = Eigen::Matrix; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:113:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:39: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_namespace::model_basics_regression; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:54: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_namespace::model_basics_regression; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; bool NeedToTranspose = false; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:0: required from ‘double stan::mcmc::diag_e_metric::T(stan::mcmc::diag_e_point&) [with Model = model_basics_regression_namespace::model_basics_regression; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:20:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_namespace::model_basics_regression; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::ArrayWrapper > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:79:16: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression.h:749:0: required from ‘stan::scalar_type_t model_basics_regression_namespace::model_basics_regression::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = false; VecR = Eigen::Matrix; VecI = Eigen::Matrix; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression.h:1407:0: required from ‘T_ model_basics_regression_namespace::model_basics_regression::log_prob(Eigen::Matrix&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:115:0: required from ‘double stan::model::model_base_crtp::log_prob_propto(Eigen::VectorXd&, std::ostream*) const [with M = model_basics_regression_namespace::model_basics_regression; Eigen::VectorXd = Eigen::Matrix; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:113:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:43: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_namespace::model_basics_regression; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_namespace::model_basics_regression; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43: required from ‘static void Eigen::internal::gemv_dense_selector<1, StorageOrder, BlasCompatible>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; int StorageOrder = 0; bool BlasCompatible = true; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_namespace::model_basics_regression; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_namespace::model_basics_regression; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_namespace::model_basics_regression; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:506:13: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_namespace::model_basics_regression; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_namespace::model_basics_regression; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_namespace::model_basics_regression; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>; Derived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_namespace::model_basics_regression; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"../inst/include" -I"/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include' -I/usr/local/include -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -Wall -c stanExports_basics_regression_nospikes.cc -o stanExports_basics_regression_nospikes.o In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:205, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3, from stanExports_basics_regression_nospikes.h:23, from stanExports_basics_regression_nospikes.cc:5: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:174: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:165: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:271: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:18, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/shared_ptr.hpp:17, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/date_time/time_clock.hpp:17, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:15, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 361 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:7: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 508 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 604 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 613 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 615 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/SparseCore:37, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Sparse:26, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:19:52: required from ‘struct Eigen::internal::traits > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:42:59: required from ‘struct Eigen::EigenBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolverBase.h:68:7: required from ‘class Eigen::SolverBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:59:49: required from ‘class Eigen::LDLT >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:46:15: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:69:42: required from ‘class Eigen::LDLT >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:46:15: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:287:19: required from ‘class Eigen::LDLT >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:46:15: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:47:29: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:47:41: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::ArrayWrapper, 0> >, const Eigen::CwiseNullaryOp, Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, 0> >, const Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0> >, const Eigen::CwiseNullaryOp, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:47:45: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/multiply_lower_tri_self_transpose.hpp:35:26: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true>, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1, true>, -1, 1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, true>, -1, 1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from ‘class Eigen::VectorBlock, -1, 1, true>, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/multiply_lower_tri_self_transpose.hpp:35:34: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/linspaced_array.hpp:37:49: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/linspaced_row_vector.hpp:32:28: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/linspaced_row_vector.hpp:32:39: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:53: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:72: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:77: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:71:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:71:29: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:86:43: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:22: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, Eigen::internal::member_sum, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix >, Eigen::internal::member_sum, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix >, Eigen::internal::member_sum, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from ‘class Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:38: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ceil.hpp:57:52: required from ‘stan::math::ceil >(const Eigen::Matrix&):: [with auto:244 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::ceil >(const Eigen::Matrix&)::; T2 = Eigen::Matrix; stan::require_t::type> >* = 0; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ceil.hpp:56:46: required from ‘auto stan::math::ceil(const Container&) [with Container = Eigen::Matrix; stan::require_container_st* = 0; stan::require_not_var_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:197:41: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ceil.hpp:57:52: required from ‘stan::math::ceil >(const Eigen::Matrix&):: [with auto:244 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::ceil >(const Eigen::Matrix&)::; T2 = Eigen::Matrix; stan::require_t::type> >* = 0; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ceil.hpp:56:46: required from ‘auto stan::math::ceil(const Container&) [with Container = Eigen::Matrix; stan::require_container_st* = 0; stan::require_not_var_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:197:41: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70: required from ‘stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::ceil >(const Eigen::Matrix&)::&):: [with auto:6 = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::ceil >(const Eigen::Matrix&)::&)::; Args = {Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::ceil >(const Eigen::Matrix&)::; T2 = Eigen::Matrix; stan::require_t::type> >* = 0; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ceil.hpp:56:46: required from ‘auto stan::math::ceil(const Container&) [with Container = Eigen::Matrix; stan::require_container_st* = 0; stan::require_not_var_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:197:41: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::internal::member_minCoeff, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::internal::member_minCoeff, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::internal::member_minCoeff, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from ‘class Eigen::PartialReduxExpr, Eigen::internal::member_minCoeff, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:203:38: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/one_hot_row_vector.hpp:25:52: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/one_hot_vector.hpp:25:46: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:13:64: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:26:31: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:27:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:27:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:28:38: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0, 5>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:28:39: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:37:40: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:37:40: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_var_estimator.hpp:28:30: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor.hpp:13, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:15, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:7, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combination(std::vector&, const int&, const int&, const int&)’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:73:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 73 | for (std::size_t i = 0; i < p - 1; i++) { | ~~^~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:79:16: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 79 | } while (k < x); | ~~^~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combos(const int&, const double&, const int&, std::vector >&)’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:102:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 102 | for (std::size_t i = 1; i != choose_dimk + 1; i++) { | ~~^~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:105:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 105 | for (std::size_t j = 0; j != k; j++) { | ~~^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::increment(std::vector&, const int&, const double&, const std::vector&, std::vector&)’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:126:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 126 | for (std::size_t j = 0; j != k; j++) { | ~~^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:132:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | while ((first_zero < index.size()) && index[first_zero]) { | ~~~~~~~~~~~^~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:135:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | if (first_zero == index.size()) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:143:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t i = 0; i != first_zero + 1; i++) { | ~~^~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::signcombos(const int&, const double&, const int&, std::vector >&)’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:168:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 168 | for (std::size_t i = 1; i != choose_dimk + 1; i++) { | ~~^~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/ode_store_sensitivities.hpp:40:64: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/arg.hpp:25, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/placeholders.hpp:24, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/apply.hpp:24, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/serialization/array_optimization.hpp:18, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/serialization/array_wrapper.hpp:21, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/serialization/array.hpp:26, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/storage.hpp:22, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/vector.hpp:21, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:23, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint.hpp:25, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor.hpp:16: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/assert.hpp: At global scope: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/traits.hpp:21, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/storage.hpp:27: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include/Rcpp/platform/compiler.h:100, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include/Rcpp/r/headers.h:66, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include/RcppCommon.h:30, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include/Rcpp.h:27, from stanExports_basics_regression_nospikes.cc:3: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/fusion/functional/invocation/detail/that_ptr.hpp:13, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/fusion/functional/invocation/invoke.hpp:52, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/fusion/functional/adapter/fused.hpp:17, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/fusion/functional/generation/make_fused.hpp:13, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/fusion/include/make_fused.hpp:11, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint/util/resize.hpp:28, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint/util/state_wrapper.hpp:26, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:33: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:92:42: required from ‘stan::math::log_sum_exp >(const Eigen::Matrix&):: [with auto:304 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:93:13: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp >(const Eigen::Matrix&)::; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:83:39: required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:92:42: required from ‘stan::math::log_sum_exp >(const Eigen::Matrix&):: [with auto:304 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:93:13: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp >(const Eigen::Matrix&)::; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:83:39: required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:92:42: required from ‘stan::math::log_sum_exp >(const Eigen::Matrix&):: [with auto:304 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:93:13: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp >(const Eigen::Matrix&)::; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:83:39: required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:92:26: required from ‘stan::math::log_sum_exp >(const Eigen::Matrix&):: [with auto:304 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:93:13: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp >(const Eigen::Matrix&)::; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:83:39: required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:38:59: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 5>, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 5>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 5>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 5>, Eigen::Matrix, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 5>, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 5>, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:46:75: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, Eigen::Product, 5>, Eigen::Matrix, 0>, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >, Eigen::Product, 5>, Eigen::Matrix, 0>, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >, Eigen::Product, 5>, Eigen::Matrix, 0>, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base > >, Eigen::Product, 5>, Eigen::Matrix, 0>, 2, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl > >, Eigen::Product, 5>, Eigen::Matrix, 0>, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product > >, Eigen::Product, 5>, Eigen::Matrix, 0>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:46:76: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:135:41: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/hmm_latent_rng.hpp:83:27: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_cholesky_rng.hpp:49:68: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1>, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 1>, Eigen::Transpose >, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 1>, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 1>, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_cholesky_rng.hpp:49:68: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::TriangularView >, 2>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::TriangularView >, 2>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::TriangularView >, 2>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::TriangularView >, 2>, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::TriangularView >, 2>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::TriangularView >, 2>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:42: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::TriangularView >, 2>, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::TriangularView >, 2>, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::TriangularView >, 2>, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::TriangularView >, 2>, 0>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:32: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose >, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose >, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/inv_wishart_rng.hpp:27:40: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/inv_wishart_rng.hpp:27:40: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/inv_wishart_rng.hpp:27:40: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:89:47: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:89:54: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 6>, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 6>, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 6>, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, 6>, Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, 6>, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:109:64: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 6>, Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 6>, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 6>, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, 6>, Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:108:51: recursively required by substitution of ‘template const Eigen::internal::triangular_solve_retval >, 6>, Other> Eigen::TriangularViewImpl >, 6, Eigen::Dense>::solve(const Eigen::MatrixBase&) const [with int Side = ; Other = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:108:51: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from ‘struct Eigen::internal::accessors_level >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:110:32: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:110:32: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:110:43: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:111:51: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product > >, Eigen::Transpose >, 6>, Eigen::Transpose >, 6>, Eigen::Matrix > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:111:52: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:62:23: required from ‘static auto stan::math::apply_scalar_unary::type>::value, void>::type>::apply(const T&) [with F = stan::math::lgamma_fun; T = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:72:38: required from ‘struct stan::math::apply_scalar_unary, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lgamma.hpp:120:50: required from ‘auto stan::math::lgamma(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_not_var_matrix_t* = 0; stan::require_not_nonscalar_prim_or_rev_kernel_expression_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multinomial_logit_lpmf.hpp:39:44: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp: In member function ‘virtual std::vector > stan::io::dump::vals_c(const std::string&) const’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:694:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 694 | for (comp_iter = 0, real_iter = 0; real_iter < val_r->second.first.size(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:707:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 707 | real_iter < val_i->second.first.size(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, -1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:102:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:111:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:116:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34: required from ‘class Eigen::RefBase, 0, Eigen::OuterStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Ref.h:281:76: required from ‘class Eigen::Ref, 0, Eigen::OuterStride<> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:76:42: required from ‘class Eigen::LLT, 0, Eigen::OuterStride<> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:142:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:13:7: required from ‘class stan::math::arena_matrix, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:144:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, 1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 0, Eigen::Stride<0, 0> >, 1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:42:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:28:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:28:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:32:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:94:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:94:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:94:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:94:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:94:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17: recursively required by substitution of ‘template static std::true_type stan::is_base_pointer_convertible >::f(const Eigen::EigenBase*) [with OtherDerived = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17: required from ‘struct stan::is_base_pointer_convertible >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_eigen.hpp:20:8: required from ‘struct stan::is_eigen >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:301:19: required by substitution of ‘template class stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type> [with T = Eigen::SparseMatrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:120:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, 0, Eigen::Stride<0, 0> > >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7: required from ‘class Eigen::SparseMapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:148:7: required from ‘class Eigen::SparseMapBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:222:7: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:129:7: required from ‘class stan::math::arena_matrix, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:814:9: required from ‘class stan::math::vari_value, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:419:57: required from ‘const auto& stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::val() const [with T = Eigen::SparseMatrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:120:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:97:21: required from ‘class Eigen::Tridiagonalization >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:111:62: required from ‘class Eigen::SelfAdjointEigenSolver >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigendecompose_sym.hpp:40:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun.hpp:75, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev.hpp:10, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/test_gradients.hpp:7, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:49: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp: In function ‘auto stan::math::generalized_inverse(const VarMat&)’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:67: note: ‘-Wmisleading-indentation’ is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers 67 | if (G.size() == 0) | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:67: note: adding ‘-flarge-source-files’ will allow for more column-tracking support, at the expense of compilation time and memory /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1> >::adj_Op, Eigen::Matrix, -1, 1> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1> >::adj_Op, Eigen::Matrix, -1, 1> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1> >::adj_Op, Eigen::Matrix, -1, 1> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1> >::adj_Op, Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1> >::adj_Op, Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl, -1, 1> >::adj_Op, Eigen::Matrix, -1, 1>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: required from ‘class Eigen::CwiseUnaryView, -1, 1> >::adj_Op, Eigen::Matrix, -1, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/grad.hpp:27:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log, 0> >(const Eigen::Diagonal, 0>&):: [with auto:169 = Eigen::Diagonal, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, 0> >(const Eigen::Diagonal, 0>&)::; T2 = Eigen::Diagonal, 0>; stan::require_t::type> >* = 0; T = Eigen::Diagonal, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Diagonal, 0>; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:49:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log, 0> >(const Eigen::Diagonal, 0>&):: [with auto:169 = Eigen::Diagonal, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, 0> >(const Eigen::Diagonal, 0>&)::; T2 = Eigen::Diagonal, 0>; stan::require_t::type> >* = 0; T = Eigen::Diagonal, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Diagonal, 0>; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:49:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70: required from ‘stan::math::apply_vector_unary, 0>, void>::apply, 0> >(const Eigen::Diagonal, 0>&):: >(const Eigen::Diagonal, 0>&, const stan::math::log, 0> >(const Eigen::Diagonal, 0>&)::&):: [with auto:6 = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary, 0>, void>::apply, 0> >(const Eigen::Diagonal, 0>&):: >(const Eigen::Diagonal, 0>&, const stan::math::log, 0> >(const Eigen::Diagonal, 0>&)::&)::; Args = {Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, 0> >(const Eigen::Diagonal, 0>&)::; T2 = Eigen::Diagonal, 0>; stan::require_t::type> >* = 0; T = Eigen::Diagonal, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Diagonal, 0>; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:49:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:13:7: required from ‘class stan::math::arena_matrix, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:51:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_softmax.hpp:73:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/matrix_power.hpp:63:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/matrix_power.hpp:64:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase*, -1, -1> > >::adj_Op, Eigen::Map*, -1, -1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase*, -1, -1> > >::adj_Op, Eigen::Map*, -1, -1> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase*, -1, -1> > >::adj_Op, Eigen::Map*, -1, -1> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase*, -1, -1> > >::adj_Op, Eigen::Map*, -1, -1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase*, -1, -1> > >::adj_Op, Eigen::Map*, -1, -1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl*, -1, -1> > >::adj_Op, Eigen::Map*, -1, -1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: required from ‘class Eigen::CwiseUnaryView*, -1, -1> > >::adj_Op, Eigen::Map*, -1, -1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/mdivide_left_spd.hpp:67:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/mdivide_left_tri.hpp:85:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Transpose > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Transpose >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:25:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 0, Eigen::Stride<0, 0> >, -1, 1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:55:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:13:7: required from ‘class stan::math::arena_matrix, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:56:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 0, Eigen::Stride<0, 0> >, -1, 1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from ‘class Eigen::VectorBlock, 0, Eigen::Stride<0, 0> >, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:63:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from ‘class Eigen::VectorBlock, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:86:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Block, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Block, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Block, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:86:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> > >, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 0, Eigen::Stride<0, 0> > >, -1, 1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from ‘class Eigen::VectorBlock, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_cov_matrix.hpp:56:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/rows_dot_self.hpp:41:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd.hpp:56:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Transpose > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Transpose >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd.hpp:69:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Transpose > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Transpose > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Matrix, const Eigen::Transpose > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd.hpp:69:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd.hpp:70:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd_V.hpp:61:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Transpose > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd_V.hpp:61:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DiagonalMatrix.h:278:47: required from ‘struct Eigen::internal::traits, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:42:59: required from ‘struct Eigen::EigenBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DiagonalMatrix.h:18:7: required from ‘class Eigen::DiagonalBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DiagonalMatrix.h:293:7: required from ‘class Eigen::DiagonalWrapper, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd_V.hpp:63:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: required from ‘class Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:79:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:79:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:79:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase*, -1, 1> > >::adj_Op, Eigen::Map*, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase*, -1, 1> > >::adj_Op, Eigen::Map*, -1, 1> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase*, -1, 1> > >::adj_Op, Eigen::Map*, -1, 1> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase*, -1, 1> > >::adj_Op, Eigen::Map*, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase*, -1, 1> > >::adj_Op, Eigen::Map*, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl*, -1, 1> > >::adj_Op, Eigen::Map*, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: required from ‘class Eigen::CwiseUnaryView*, -1, 1> > >::adj_Op, Eigen::Map*, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:80:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:111:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView*, -1, 1> > >::val_Op, Eigen::Map*, -1, 1> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:111:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: required from ‘class Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:25:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:27:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:27:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75: required from ‘stan::math::value_of, -1, 1>&>(const Eigen::Matrix, -1, 1>&):: [with auto:11 = const Eigen::Matrix, -1, 1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::value_of, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::; Args = {const Eigen::Matrix, -1, 1, 0, -1, 1>&}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:73:21: required from ‘auto stan::math::value_of(EigMat&&) [with EigMat = const Eigen::Matrix, -1, 1>&; stan::require_eigen_dense_base_t* = 0; stan::require_not_st_arithmetic* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/algebra_solver_fp.hpp:101:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: required from ‘class Eigen::CwiseUnaryView, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/solve_powell.hpp:369:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/solve_powell.hpp:369:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/initialize.hpp:7, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/random_var_context.hpp: In member function ‘virtual std::vector > stan::io::random_var_context::vals_c(const std::string&) const’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/random_var_context.hpp:111: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 111 | for (comp_iter = 0, real_iter = 0; real_iter < val_r.size(); | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:99:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:182:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:183:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:197:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:198:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:263:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:351:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Product, Eigen::Matrix, 0>, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Product, Eigen::Matrix, 0>, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Product, Eigen::Matrix, 0>, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Product, Eigen::Matrix, 0>, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Product, Eigen::Matrix, 0>, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:351:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:459:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:314:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:314:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:314:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:370:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base >, Eigen::Matrix, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl >, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0, 6>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:179:81: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0, 6>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_matrix.hpp:133:17: required from ‘auto stan::math::to_matrix(const std::vector&, int, int) [with T = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/read_dense_inv_metric.hpp:33:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:27:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:29:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:29:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:0: recursively required by substitution of ‘template typename Eigen::ScalarBinaryOpTraits::Scalar, Eigen::internal::scalar_product_op::Scalar> >::ReturnType Eigen::MatrixBase >::dot(const Eigen::MatrixBase&) const [with OtherDerived = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:27:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:28:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:28:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:7, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:68: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp: In member function ‘virtual std::vector > stan::io::array_var_context::vals_c(const std::string&) const’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:304: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 304 | for (comp_iter = 0, real_iter = 0; real_iter < val_r->second.first.size(); | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:317: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 317 | real_iter < val_i->second.first.size(); | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:13:7: required from ‘class stan::math::arena_matrix, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:145:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_header.hpp:11, from stanExports_basics_regression_nospikes.h:25: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp: At global scope: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:159: warning: ‘stan::math::var stan::model::model_base_crtp::log_prob(std::vector, std::allocator > >&, std::vector&, std::ostream*) const [with M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; stan::math::var = stan::math::var_value; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 159 | inline math::var log_prob(std::vector& theta, | stanExports_basics_regression_nospikes.h:996: note: by ‘model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob’ 996 | log_prob(std::vector& params_r, std::vector& params_i, | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:154: warning: ‘double stan::model::model_base_crtp::log_prob(std::vector&, std::vector&, std::ostream*) const [with M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 154 | inline double log_prob(std::vector& theta, std::vector& theta_i, | stanExports_basics_regression_nospikes.h:996: note: by ‘model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob’ 996 | log_prob(std::vector& params_r, std::vector& params_i, | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:96: warning: ‘stan::math::var stan::model::model_base_crtp::log_prob(Eigen::Matrix, -1, 1>&, std::ostream*) const [with M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; stan::math::var = stan::math::var_value; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 96 | inline math::var log_prob(Eigen::Matrix& theta, | stanExports_basics_regression_nospikes.h:996: note: by ‘model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob’ 996 | log_prob(std::vector& params_r, std::vector& params_i, | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:91: warning: ‘double stan::model::model_base_crtp::log_prob(Eigen::VectorXd&, std::ostream*) const [with M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; Eigen::VectorXd = Eigen::Matrix; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 91 | inline double log_prob(Eigen::VectorXd& theta, | stanExports_basics_regression_nospikes.h:996: note: by ‘model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob’ 996 | log_prob(std::vector& params_r, std::vector& params_i, | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log, 0, Eigen::Stride<0, 0> > >(const Eigen::Map, 0, Eigen::Stride<0, 0> >&):: [with auto:169 = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, 0, Eigen::Stride<0, 0> > >(const Eigen::Map, 0, Eigen::Stride<0, 0> >&)::; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_t::type> >* = 0; T = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_container_st* = 0]’ stanExports_basics_regression_nospikes.h:452:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log, 0, Eigen::Stride<0, 0> > >(const Eigen::Map, 0, Eigen::Stride<0, 0> >&):: [with auto:169 = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, 0, Eigen::Stride<0, 0> > >(const Eigen::Map, 0, Eigen::Stride<0, 0> >&)::; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_t::type> >* = 0; T = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_container_st* = 0]’ stanExports_basics_regression_nospikes.h:452:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70: required from ‘stan::math::apply_vector_unary, 0, Eigen::Stride<0, 0> >, void>::apply, 0, Eigen::Stride<0, 0> > >(const Eigen::Map, 0, Eigen::Stride<0, 0> >&):: >(const Eigen::Map, 0, Eigen::Stride<0, 0> >&, const stan::math::log, 0, Eigen::Stride<0, 0> > >(const Eigen::Map, 0, Eigen::Stride<0, 0> >&)::&):: [with auto:6 = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary, 0, Eigen::Stride<0, 0> >, void>::apply, 0, Eigen::Stride<0, 0> > >(const Eigen::Map, 0, Eigen::Stride<0, 0> >&):: >(const Eigen::Map, 0, Eigen::Stride<0, 0> >&, const stan::math::log, 0, Eigen::Stride<0, 0> > >(const Eigen::Map, 0, Eigen::Stride<0, 0> >&)::&)::; Args = {Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, 0, Eigen::Stride<0, 0> > >(const Eigen::Map, 0, Eigen::Stride<0, 0> >&)::; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_t::type> >* = 0; T = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_container_st* = 0]’ stanExports_basics_regression_nospikes.h:452:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, int>(const Eigen::Map, 0, Eigen::Stride<0, 0> >&, const int&, stan::return_type_t, 0, Eigen::Stride<0, 0> >, int>&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, int>(const Eigen::Map, 0, Eigen::Stride<0, 0> >&, const int&, stan::return_type_t, 0, Eigen::Stride<0, 0> >, int>&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, int>(const Eigen::Map, 0, Eigen::Stride<0, 0> >&, const int&, stan::return_type_t, 0, Eigen::Stride<0, 0> >, int>&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, 0, Eigen::Stride<0, 0> >, int>(const Eigen::Map, 0, Eigen::Stride<0, 0> >&, const int&, stan::return_type_t, 0, Eigen::Stride<0, 0> >, int>&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, 0, Eigen::Stride<0, 0> >, int>(const Eigen::Map, 0, Eigen::Stride<0, 0> >&, const int&, stan::return_type_t, 0, Eigen::Stride<0, 0> >, int>&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_constrain.hpp:102:18: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, 0, Eigen::Stride<0, 0> >; L = int; stan::require_eigen_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_not_st_var* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix; bool Jacobian = false; LB = int; LP = double; Sizes = {int}; T = double]’ stanExports_basics_regression_nospikes.h:619:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, const int&>(Eigen::Map, 0, Eigen::Stride<0, 0> >&&, const int&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, const int&>(Eigen::Map, 0, Eigen::Stride<0, 0> >&&, const int&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, const int&>(Eigen::Map, 0, Eigen::Stride<0, 0> >&&, const int&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, 0, Eigen::Stride<0, 0> >, const int&>(Eigen::Map, 0, Eigen::Stride<0, 0> >&&, const int&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, 0, Eigen::Stride<0, 0> >, const int&>(Eigen::Map, 0, Eigen::Stride<0, 0> >&&, const int&)::, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_constrain.hpp:83:26: required from ‘auto stan::math::lb_constrain(T&&, L&&) [with T = Eigen::Map, 0, Eigen::Stride<0, 0> >; L = const int&; stan::require_eigen_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_not_st_var* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:388:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix; bool Jacobian = false; LB = int; LP = double; Sizes = {int}; T = double]’ stanExports_basics_regression_nospikes.h:619:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70: required from ‘stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::exp >(const Eigen::Matrix&)::&):: [with auto:6 = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::exp >(const Eigen::Matrix&)::&)::; Args = {Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::exp >(const Eigen::Matrix&)::; T2 = Eigen::Matrix; stan::require_t::type> >* = 0; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/exp.hpp:62:46: required from ‘auto stan::math::exp(const Container&) [with Container = Eigen::Matrix; stan::require_container_st* = 0]’ stanExports_basics_regression_nospikes.h:661:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log >(const Eigen::Matrix&):: [with auto:169 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log >(const Eigen::Matrix&)::; T2 = Eigen::Matrix; stan::require_t::type> >* = 0; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Matrix; stan::require_container_st* = 0]’ stanExports_basics_regression_nospikes.h:665:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70: required from ‘stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::log >(const Eigen::Matrix&)::&):: [with auto:6 = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::log >(const Eigen::Matrix&)::&)::; Args = {Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log >(const Eigen::Matrix&)::; T2 = Eigen::Matrix; stan::require_t::type> >* = 0; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Matrix; stan::require_container_st* = 0]’ stanExports_basics_regression_nospikes.h:665:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/subtract.hpp:45:13: required from ‘auto stan::math::subtract(const Mat1&, const Mat2&) [with Mat1 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >; Mat2 = Eigen::Matrix; stan::require_all_eigen_t* = 0; stan::require_all_not_st_var* = 0]’ stanExports_basics_regression_nospikes.h:665:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:35: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose >, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:28:11: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:28:11: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::as_array_or_scalar&>(const std::vector&)::; Args = {const std::vector >&}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:72:21: required from ‘auto stan::math::as_array_or_scalar(T&&) [with T = const std::vector&; stan::require_std_vector_t* = 0; stan::require_not_std_vector_t::type>* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:28:39: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:47:43: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Select.h:52:7: required from ‘class Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:47:55: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/fabs.hpp:67:51: required from ‘stan::math::fabs, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >(const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >&):: [with auto:9 = Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::fabs, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >(const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >&)::; T2 = Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >; stan::require_t::type> >* = 0; T = Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/fabs.hpp:66:46: required from ‘auto stan::math::fabs(const Container&) [with Container = Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array >; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:47:37: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > >(const Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >&):: [with auto:169 = Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > > >(const Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >&)::; T2 = Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >; stan::require_t::type> >* = 0; T = Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::CwiseUnaryOp, const Eigen::Select, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Array > >; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:49:25: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:75: required from ‘stan::return_type_t stan::math::lmgamma(int, T) [with T = double; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lmgamma.hpp:16:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:32: required from ‘stan::return_type_t stan::math::lmgamma(int, T) [with T = double; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lmgamma.hpp:16:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:62:23: required from ‘static auto stan::math::apply_scalar_unary::type>::value, void>::type>::apply(const T&) [with F = stan::math::lgamma_fun; T = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:72:38: required from ‘struct stan::math::apply_scalar_unary, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lgamma.hpp:120:50: required from ‘auto stan::math::lgamma(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseNullaryOp, Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_not_var_matrix_t* = 0; stan::require_not_nonscalar_prim_or_rev_kernel_expression_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:29: required from ‘stan::return_type_t stan::math::lmgamma(int, T) [with T = double; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lmgamma.hpp:16:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:28:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27:67: required from ‘Derived& Eigen::ArrayBase::operator+=(const Scalar&) [with Derived = Eigen::ArrayWrapper >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:280:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27:67: required from ‘Derived& Eigen::ArrayBase::operator+=(const Scalar&) [with Derived = Eigen::ArrayWrapper >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:280:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:156:22: required from ‘bool Eigen::DenseBase::allFinite() const [with Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:31:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp: In instantiation of ‘std::vector stan::io::array_var_context::validate_dims(const std::vector >&, T, const std::vector >&) [with T = long unsigned int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:97:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 74 | for (int i = 0; i < dims.size(); i++) { | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp: In instantiation of ‘std::vector stan::io::array_var_context::validate_dims(const std::vector >&, T, const std::vector >&) [with T = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:118:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] stanExports_basics_regression_nospikes.h: In instantiation of ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::unconstrain_array_impl(const VecVar&, const VecI&, VecVar&, std::ostream*) const [with VecVar = std::vector; VecI = std::vector; stan::require_vector_t* = 0; stan::require_vector_like_vt* = 0; std::ostream = std::basic_ostream]’: stanExports_basics_regression_nospikes.h:1024:0: required from here stanExports_basics_regression_nospikes.h:695: warning: variable ‘pos__’ set but not used [-Wunused-but-set-variable] 695 | int pos__ = std::numeric_limits::min(); | stanExports_basics_regression_nospikes.h: In instantiation of ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::unconstrain_array_impl(const VecVar&, const VecI&, VecVar&, std::ostream*) const [with VecVar = Eigen::Matrix; VecI = std::vector; stan::require_vector_t* = 0; stan::require_vector_like_vt* = 0; std::ostream = std::basic_ostream]’: stanExports_basics_regression_nospikes.h:1034:0: required from here stanExports_basics_regression_nospikes.h:695: warning: variable ‘pos__’ set but not used [-Wunused-but-set-variable] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp: In instantiation of ‘SEXPREC* rstan::stan_fit::standalone_gqs(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’: stanExports_basics_regression_nospikes.cc:30:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1252: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:181:31: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:181:31: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:182:31: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:117:39: required from ‘TupleT stan::math::internal::grad_2F1_impl_ab(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:204:78: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:513:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/../plugins/CommonCwiseUnaryOps.h:62:1: required by substitution of ‘template typename Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >::CastXpr::Type Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >::cast() const [with NewType = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/append_row.hpp:102:38: required from ‘Eigen::Matrix::type, -1, 1> stan::math::append_row(const ColVec&, const Scal&) [with ColVec = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scal = double; stan::require_t >* = 0; stan::require_stan_scalar_t* = 0; typename stan::return_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:29:31: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:5, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_2F1_converges.hpp:5, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err.hpp:4, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:12: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:47:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<(((!(Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit)) && (! T::IsVectorAtCompileTime)) && (!(Eigen::internal::traits<_Rhs>::Flags & Eigen::RowMajorBit)))>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:74:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:207:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 207 | for (size_t i = 0; i < x.rows(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:208:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 208 | for (size_t j = 0; j < x.cols(); j++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_diag_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_positive >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_positive.hpp:29:20: required from ‘void stan::math::check_positive(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_diag_inv_metric.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:142:28: required from ‘bool Eigen::DenseBase::hasNaN() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:156:40: required from ‘bool Eigen::DenseBase::allFinite() const [with Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:31:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:142:28: required from ‘bool Eigen::DenseBase::hasNaN() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:156:40: required from ‘bool Eigen::DenseBase::allFinite() const [with Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:30:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta.hpp:70, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/invalid_argument.hpp:4, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:4, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/core.hpp:4, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:10: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_less_or_equal.hpp: In instantiation of ‘void stan::math::check_less_or_equal(const char*, const char*, const T_y&, const T_high&, Idxs ...) [with T_y = long unsigned int; T_high = long int; stan::require_all_stan_scalar_t* = 0; Idxs = {}]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:79:0: required from ‘std::vector stan::io::array_var_context::validate_dims(const std::vector >&, T, const std::vector >&) [with T = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:118:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_less_or_equal.hpp:39:20: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘const long int’ [-Wsign-compare] 39 | if (unlikely(!(y <= high))) { | ~~~^~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/compiler_attributes.hpp:9:41: note: in definition of macro ‘unlikely’ 9 | #define unlikely(x) __builtin_expect(!!(x), 0) | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&&)::::, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&&)::::, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&&)::::, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, 0, Eigen::Stride<0, 0> > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&&)::::, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, 0, Eigen::Stride<0, 0> > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&&)::::, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:66: required from ‘stan::math::value_of_rec, 0, Eigen::Stride<0, 0> > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&&):: [with auto:1 = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::value_of_rec, 0, Eigen::Stride<0, 0> > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&&)::; Args = {Eigen::Map, 0, Eigen::Stride<0, 0> >}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:108:21: required from ‘auto stan::math::value_of_rec(T&&) [with T = Eigen::Map, 0, Eigen::Stride<0, 0> >; = void; = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_greater_or_equal.hpp:157:30: required from ‘void stan::math::check_greater_or_equal(const char*, const char*, const T_y&, const T_low&, Idxs ...) [with T_y = std::vector; T_low = int; stan::require_vector_t* = 0; stan::require_not_std_vector_vt* = 0; stan::require_stan_scalar_t* = 0; Idxs = {long unsigned int}]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_greater_or_equal.hpp:327:27: required from ‘void stan::math::check_greater_or_equal(const char*, const char*, const T_y&, const T_low&, Idxs ...) [with T_y = std::vector >; T_low = int; stan::require_std_vector_vt* = 0; stan::require_not_std_vector_t* = 0; Idxs = {}]’ stanExports_basics_regression_nospikes.h:280:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/subtract.hpp:79:21: required from ‘auto stan::math::subtract(const Mat&, Scal) [with Mat = Eigen::Matrix; Scal = int; stan::require_eigen_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_not_st_var* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_free.hpp:37:29: required from ‘auto stan::math::lb_free(T&&, L&&) [with T = const Eigen::Matrix&; L = const int&; stan::require_not_std_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:253:0: required from ‘void stan::io::serializer::write_free_lb(const L&, const S&) [with S = Eigen::Matrix; L = int; T = double]’ stanExports_basics_regression_nospikes.h:796:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector; stan::require_vector_t* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:1015:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/subtract.hpp:79:32: required from ‘auto stan::math::subtract(const Mat&, Scal) [with Mat = Eigen::Matrix; Scal = int; stan::require_eigen_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_not_st_var* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_free.hpp:37:29: required from ‘auto stan::math::lb_free(T&&, L&&) [with T = const Eigen::Matrix&; L = const int&; stan::require_not_std_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:253:0: required from ‘void stan::io::serializer::write_free_lb(const L&, const S&) [with S = Eigen::Matrix; L = int; T = double]’ stanExports_basics_regression_nospikes.h:796:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector; stan::require_vector_t* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:1015:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&):: [with auto:169 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::; T2 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_t::type> >* = 0; T = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_free.hpp:37:20: required from ‘auto stan::math::lb_free(T&&, L&&) [with T = const Eigen::Matrix&; L = const int&; stan::require_not_std_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:253:0: required from ‘void stan::io::serializer::write_free_lb(const L&, const S&) [with S = Eigen::Matrix; L = int; T = double]’ stanExports_basics_regression_nospikes.h:796:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector; stan::require_vector_t* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:1015:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&):: [with auto:169 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::; T2 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_t::type> >* = 0; T = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_free.hpp:37:20: required from ‘auto stan::math::lb_free(T&&, L&&) [with T = const Eigen::Matrix&; L = const int&; stan::require_not_std_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:253:0: required from ‘void stan::io::serializer::write_free_lb(const L&, const S&) [with S = Eigen::Matrix; L = int; T = double]’ stanExports_basics_regression_nospikes.h:796:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector; stan::require_vector_t* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:1015:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70: required from ‘stan::math::apply_vector_unary, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&):: >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&, const stan::math::log, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::&):: [with auto:6 = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&):: >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&, const stan::math::log, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::&)::; Args = {Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::; T2 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_t::type> >* = 0; T = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46: required from ‘auto stan::math::log(const Container&) [with Container = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_free.hpp:37:20: required from ‘auto stan::math::lb_free(T&&, L&&) [with T = const Eigen::Matrix&; L = const int&; stan::require_not_std_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:253:0: required from ‘void stan::io::serializer::write_free_lb(const L&, const S&) [with S = Eigen::Matrix; L = int; T = double]’ stanExports_basics_regression_nospikes.h:796:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector; stan::require_vector_t* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:1015:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp: In instantiation of ‘int stan::services::standalone_generate(const Model&, const Eigen::MatrixXd&, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; Eigen::MatrixXd = Eigen::Matrix]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1253:0: required from ‘SEXPREC* rstan::stan_fit::standalone_gqs(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:30:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:55: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 55 | if (p_names.size() != draws.cols()) { | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 71 | for (size_t i = 0; i < draws.rows(); ++i) { | /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:72:0: required from ‘int stan::services::standalone_generate(const Model&, const Eigen::MatrixXd&, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; Eigen::MatrixXd = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1253:0: required from ‘SEXPREC* rstan::stan_fit::standalone_gqs(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:30:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/assert.hpp:35, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:20, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:19, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/size_type.hpp:20, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/size.hpp:21, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/functions.hpp:20, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range.hpp:18, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint/util/resize.hpp:22: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::constraint::failed() [with Model = boost::algorithm::FinderConcept >, __gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:81:13: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:65:52: warning: ‘this’ pointer is null [-Wnonnull] 65 | static void failed() { ((Model*)0)->constraints(); } | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:26, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:16, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string.hpp:23, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:4, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:46: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/concept.hpp:40:18: note: in a call to non-static member function ‘void boost::algorithm::FinderConcept::constraints() [with FinderT = boost::algorithm::detail::token_finderF >; IteratorT = __gnu_cxx::__normal_iterator >]’ 40 | void constraints() | ^~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::constraint::failed() [with Model = boost::algorithm::FinderConcept, __gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/find_format.hpp:98:13: required from ‘void boost::algorithm::find_format(SequenceT&, FinderT, FormatterT) [with SequenceT = std::__cxx11::basic_string; FinderT = detail::first_finderF; FormatterT = detail::const_formatF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/replace.hpp:179:44: required from ‘void boost::algorithm::replace_first(SequenceT&, const Range1T&, const Range2T&) [with SequenceT = std::__cxx11::basic_string; Range1T = char [11]; Range2T = char [1]]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:133:29: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:65:52: warning: ‘this’ pointer is null [-Wnonnull] 65 | static void failed() { ((Model*)0)->constraints(); } | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/concept.hpp:40:18: note: in a call to non-static member function ‘void boost::algorithm::FinderConcept::constraints() [with FinderT = boost::algorithm::detail::first_finderF; IteratorT = __gnu_cxx::__normal_iterator >]’ 40 | void constraints() | ^~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::constraint::failed() [with Model = boost::algorithm::FormatterConcept >, boost::algorithm::detail::first_finderF, __gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/find_format.hpp:103:13: required from ‘void boost::algorithm::find_format(SequenceT&, FinderT, FormatterT) [with SequenceT = std::__cxx11::basic_string; FinderT = detail::first_finderF; FormatterT = detail::const_formatF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/replace.hpp:179:44: required from ‘void boost::algorithm::replace_first(SequenceT&, const Range1T&, const Range2T&) [with SequenceT = std::__cxx11::basic_string; Range1T = char [11]; Range2T = char [1]]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:133:29: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:65:52: warning: ‘this’ pointer is null [-Wnonnull] 65 | static void failed() { ((Model*)0)->constraints(); } | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/concept.hpp:65:18: note: in a call to non-static member function ‘void boost::algorithm::FormatterConcept::constraints() [with FormatterT = boost::algorithm::detail::const_formatF >; FinderT = boost::algorithm::detail::first_finderF; IteratorT = __gnu_cxx::__normal_iterator >]’ 65 | void constraints() | ^~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from ‘class Eigen::VectorBlock, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:563:19: required from ‘Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix; DiagType = Eigen::Matrix; SubDiagType = Eigen::Matrix; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:460:49: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:92:26: required from ‘stan::math::log_sum_exp >(const Eigen::Matrix&):: [with auto:304 = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:93:13: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp >(const Eigen::Matrix&)::; T = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:83:39: required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix; stan::require_container_st* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:330: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:72:102: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 433 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 434 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 435 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 460 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 461 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 462 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 465 | typedef QuadPacket RhsPacketx4; | ^~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1080:42: required from ‘struct Eigen::internal::gebp_kernel, 4, 4, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:92:109: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 433 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 434 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 435 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 460 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 461 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 462 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 465 | typedef QuadPacket RhsPacketx4; | ^~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1085:45: required from ‘struct Eigen::internal::gebp_kernel, 4, 4, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:92:109: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 433 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 434 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 435 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 460 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 461 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 462 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 465 | typedef QuadPacket RhsPacketx4; | ^~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CommaInitializer.h:159:10: required from ‘Eigen::CommaInitializer Eigen::DenseBase::operator<<(const Eigen::DenseBase&) [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/append_row.hpp:102:10: required from ‘Eigen::Matrix::type, -1, 1> stan::math::append_row(const ColVec&, const Scal&) [with ColVec = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scal = double; stan::require_t >* = 0; stan::require_stan_scalar_t* = 0; typename stan::return_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:29:31: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Matrix; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Matrix; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Matrix; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:478:32: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::mean() const [with Derived = Eigen::Matrix; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:25:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:451:40: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:91: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from ‘class Eigen::VectorBlock, 1, -1, false>, -1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:101: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:191:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression_nospikes.h:508:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression_nospikes.h:508:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:192:0: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_any_st_var* = 0; stan::return_type_t = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression_nospikes.h:508:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:193:0: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_any_st_var* = 0; stan::return_type_t = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression_nospikes.h:508:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression_nospikes.h:508:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression_nospikes.h:508:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:197:0: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_any_st_var* = 0; stan::return_type_t = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression_nospikes.h:508:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:197:0: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_any_st_var* = 0; stan::return_type_t = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression_nospikes.h:508:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75: required from ‘stan::math::value_of, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&):: [with auto:11 = const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression_nospikes.h:508:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:213:0: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_any_st_var* = 0; stan::return_type_t = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression_nospikes.h:508:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:213:0: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_any_st_var* = 0; stan::return_type_t = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression_nospikes.h:508:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> >&>(const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >&)::::, const Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:213:0: required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t&) [with T = Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_any_st_var* = 0; stan::return_type_t = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:386:0: required from ‘auto stan::io::deserializer::read_constrain_lb(const LB&, LP&, Sizes ...) [with Ret = Eigen::Matrix, -1, 1>; bool Jacobian = true; LB = int; LP = stan::math::var_value; Sizes = {int}; T = stan::math::var_value]’ stanExports_basics_regression_nospikes.h:508:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:34:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_var_matrix.hpp:79:8: required from ‘struct stan::is_any_var_matrix, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, Eigen::Matrix, -1, -1, 0, -1, -1>, Eigen::Matrix, -1, 1, 0, -1, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/meta/return_var_matrix.hpp:22:7: required by substitution of ‘template using stan::return_var_matrix_t = std::conditional_t::value, stan::math::var_value::type>::type, void>::type>, typename stan::math::promote_scalar_type, typename std::decay::type>::type, void>::type> [with ReturnType = const Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Types = {Eigen::Matrix, -1, -1, 0, -1, -1>, Eigen::Matrix, -1, 1, 0, -1, 1>}]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:36:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:43:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:43:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, 5>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:43:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, 5>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:47:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:48:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>&>(const Eigen::Matrix, -1, -1>&)::::, const Eigen::Matrix, -1, -1> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>&>(const Eigen::Matrix, -1, -1>&)::::, const Eigen::Matrix, -1, -1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>&>(const Eigen::Matrix, -1, -1>&)::::, const Eigen::Matrix, -1, -1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, -1>&>(const Eigen::Matrix, -1, -1>&)::::, const Eigen::Matrix, -1, -1>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, -1>&>(const Eigen::Matrix, -1, -1>&)::::, const Eigen::Matrix, -1, -1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75: required from ‘stan::math::value_of, -1, -1>&>(const Eigen::Matrix, -1, -1>&):: [with auto:11 = const Eigen::Matrix, -1, -1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:53:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_var_matrix.hpp:79:8: required from ‘struct stan::is_any_var_matrix, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0>, Eigen::Matrix, -1, -1, 0, -1, -1>, Eigen::Matrix, -1, 1, 0, -1, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/meta/return_var_matrix.hpp:22:7: required by substitution of ‘template using stan::return_var_matrix_t = std::conditional_t::value, stan::math::var_value::type>::type, void>::type>, typename stan::math::promote_scalar_type, typename std::decay::type>::type, void>::type> [with ReturnType = const Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0>; Types = {Eigen::Matrix, -1, -1, 0, -1, -1>, Eigen::Matrix, -1, 1, 0, -1, 1>}]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:55:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, void>&>(arena_matrix, -1, -1>, void>&)::::, const Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, void>&>(arena_matrix, -1, -1>, void>&)::::, const Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, void>&>(arena_matrix, -1, -1>, void>&)::::, const Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, -1>, void>&>(arena_matrix, -1, -1>, void>&)::::, const Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, -1>, void>&>(arena_matrix, -1, -1>, void>&)::::, const Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75: required from ‘stan::math::value_of, -1, -1>, void>&>(arena_matrix, -1, -1>, void>&):: [with auto:11 = stan::math::arena_matrix, -1, -1>, void>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:66:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_var_matrix.hpp:79:8: required from ‘struct stan::is_any_var_matrix, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, Eigen::Matrix, -1, -1, 0, -1, -1>, Eigen::Matrix, -1, 1, 0, -1, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/meta/return_var_matrix.hpp:22:7: required by substitution of ‘template using stan::return_var_matrix_t = std::conditional_t::value, stan::math::var_value::type>::type, void>::type>, typename stan::math::promote_scalar_type, typename std::decay::type>::type, void>::type> [with ReturnType = const Eigen::Product, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Types = {Eigen::Matrix, -1, -1, 0, -1, -1>, Eigen::Matrix, -1, 1, 0, -1, 1>}]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:65:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:120:37: required from ‘auto stan::math::subtract(const VarMat1&, const VarMat2&) [with VarMat1 = Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> >; VarMat2 = Eigen::Matrix, -1, 1>; stan::require_all_rev_matrix_t* = 0]’ stanExports_basics_regression_nospikes.h:539:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:120:47: required from ‘auto stan::math::subtract(const VarMat1&, const VarMat2&) [with VarMat1 = Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> >; VarMat2 = Eigen::Matrix, -1, 1>; stan::require_all_rev_matrix_t* = 0]’ stanExports_basics_regression_nospikes.h:539:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_var_matrix.hpp:79:8: required from ‘struct stan::is_any_var_matrix, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1, 0, -1, 1> > >, const Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1, 0, -1, 1> > >, Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1, 0, -1, 1> >, Eigen::Matrix, -1, 1, 0, -1, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/meta/return_var_matrix.hpp:22:7: required by substitution of ‘template using stan::return_var_matrix_t = std::conditional_t::value, stan::math::var_value::type>::type, void>::type>, typename stan::math::promote_scalar_type, typename std::decay::type>::type, void>::type> [with ReturnType = const Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >::val_Op, const Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseUnaryOp, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >; Types = {Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1, 0, -1, 1> >, Eigen::Matrix, -1, 1, 0, -1, 1>}]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:121:9: required from ‘auto stan::math::subtract(const VarMat1&, const VarMat2&) [with VarMat1 = Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> >; VarMat2 = Eigen::Matrix, -1, 1>; stan::require_all_rev_matrix_t* = 0]’ stanExports_basics_regression_nospikes.h:539:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:124:40: required from ‘auto stan::math::subtract(const VarMat1&, const VarMat2&) [with VarMat1 = Eigen::CwiseUnaryOp, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> >; VarMat2 = Eigen::Matrix, -1, 1>; stan::require_all_rev_matrix_t* = 0]’ stanExports_basics_regression_nospikes.h:539:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = var_value; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:549:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = var_value; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:549:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = var_value; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:549:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:163:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = var_value; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:549:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:163:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = var_value; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:549:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:170:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = var_value; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:549:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:172:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = var_value; T2 = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:549:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:147:32: required from ‘auto stan::math::add(const VarMat&, const Arith&) [with Arith = double; VarMat = Eigen::Matrix, -1, 1>; stan::require_st_arithmetic* = 0; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:169:13: required from ‘auto stan::math::add(const Arith&, const VarMat&) [with Arith = double; VarMat = Eigen::Matrix, -1, 1>; stan::require_st_arithmetic* = 0; stan::require_rev_matrix_t* = 0]’ stanExports_basics_regression_nospikes.h:566:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:147:35: required from ‘auto stan::math::add(const VarMat&, const Arith&) [with Arith = double; VarMat = Eigen::Matrix, -1, 1>; stan::require_st_arithmetic* = 0; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:169:13: required from ‘auto stan::math::add(const Arith&, const VarMat&) [with Arith = double; VarMat = Eigen::Matrix, -1, 1>; stan::require_st_arithmetic* = 0; stan::require_rev_matrix_t* = 0]’ stanExports_basics_regression_nospikes.h:566:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17: required from ‘struct stan::is_base_pointer_convertible, const Eigen::ArrayWrapper, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_eigen.hpp:20:8: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/meta/return_var_matrix.hpp:22:7: required by substitution of ‘template using stan::return_var_matrix_t = std::conditional_t::value, stan::math::var_value::type>::type, void>::type>, typename stan::math::promote_scalar_type, typename std::decay::type>::type, void>::type> [with ReturnType = const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, -1, 1> >::val_Op, const Eigen::Matrix, -1, 1> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; Types = {Eigen::Matrix, -1, 1, 0, -1, 1>}]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:148:9: required from ‘auto stan::math::add(const VarMat&, const Arith&) [with Arith = double; VarMat = Eigen::Matrix, -1, 1>; stan::require_st_arithmetic* = 0; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:169:13: required from ‘auto stan::math::add(const Arith&, const VarMat&) [with Arith = double; VarMat = Eigen::Matrix, -1, 1>; stan::require_st_arithmetic* = 0; stan::require_rev_matrix_t* = 0]’ stanExports_basics_regression_nospikes.h:566:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:150:47: required from ‘auto stan::math::add(const VarMat&, const Arith&) [with Arith = double; VarMat = Eigen::Matrix, -1, 1>; stan::require_st_arithmetic* = 0; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:169:13: required from ‘auto stan::math::add(const Arith&, const VarMat&) [with Arith = double; VarMat = Eigen::Matrix, -1, 1>; stan::require_st_arithmetic* = 0; stan::require_rev_matrix_t* = 0]’ stanExports_basics_regression_nospikes.h:566:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:57:51: required from ‘stan::math::as_array_or_scalar, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >&>(const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >&):: [with auto:13 = const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/divide.hpp:47:29: required from ‘auto stan::math::divide(const T1&, const T2&) [with T1 = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; T2 = double; stan::require_any_eigen_t* = 0; stan::require_all_not_st_var* = 0]’ stanExports_basics_regression_nospikes.h:176:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = double; typename stan::base_type::type = double; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:658:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::write_array_impl(RNG&, VecR&, VecI&, VecVar&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; VecR = std::vector; VecI = std::vector; VecVar = std::vector; stan::require_vector_like_vt* = 0; stan::require_vector_like_vt* = 0; stan::require_vector_vt* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:987:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1105:0: required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/divide.hpp:47:33: required from ‘auto stan::math::divide(const T1&, const T2&) [with T1 = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; T2 = double; stan::require_any_eigen_t* = 0; stan::require_all_not_st_var* = 0]’ stanExports_basics_regression_nospikes.h:176:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = double; typename stan::base_type::type = double; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:658:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::write_array_impl(RNG&, VecR&, VecI&, VecVar&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; VecR = std::vector; VecI = std::vector; VecVar = std::vector; stan::require_vector_like_vt* = 0; stan::require_vector_like_vt* = 0; stan::require_vector_vt* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:987:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1105:0: required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/divide.hpp:47:64: required from ‘auto stan::math::divide(const T1&, const T2&) [with T1 = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; T2 = double; stan::require_any_eigen_t* = 0; stan::require_all_not_st_var* = 0]’ stanExports_basics_regression_nospikes.h:176:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = double; typename stan::base_type::type = double; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:658:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::write_array_impl(RNG&, VecR&, VecI&, VecVar&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; VecR = std::vector; VecI = std::vector; VecVar = std::vector; stan::require_vector_like_vt* = 0; stan::require_vector_like_vt* = 0; stan::require_vector_vt* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:987:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1105:0: required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/exp.hpp:63:51: required from ‘stan::math::exp, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&):: [with auto:215 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25: required from ‘static auto stan::math::apply_vector_unary::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::exp, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::; T2 = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_t::type> >* = 0; T = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/exp.hpp:62:46: required from ‘auto stan::math::exp(const Container&) [with Container = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_container_st* = 0]’ stanExports_basics_regression_nospikes.h:175:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = double; typename stan::base_type::type = double; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:658:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::write_array_impl(RNG&, VecR&, VecI&, VecVar&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; VecR = std::vector; VecI = std::vector; VecVar = std::vector; stan::require_vector_like_vt* = 0; stan::require_vector_like_vt* = 0; stan::require_vector_vt* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:987:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1105:0: required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/exp.hpp:63:51: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/exp.hpp:62:46: required from ‘auto stan::math::exp(const Container&) [with Container = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_container_st* = 0]’ stanExports_basics_regression_nospikes.h:175:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = double; typename stan::base_type::type = double; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:658:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::write_array_impl(RNG&, VecR&, VecI&, VecVar&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; VecR = std::vector; VecI = std::vector; VecVar = std::vector; stan::require_vector_like_vt* = 0; stan::require_vector_like_vt* = 0; stan::require_vector_vt* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:987:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1105:0: required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70: required from ‘stan::math::apply_vector_unary, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, void>::apply, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&):: >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&, const stan::math::exp, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >(const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >&)::&):: [with auto:6 = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/exp.hpp:62:46: required from ‘auto stan::math::exp(const Container&) [with Container = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; stan::require_container_st* = 0]’ stanExports_basics_regression_nospikes.h:175:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = double; typename stan::base_type::type = double; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:658:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::write_array_impl(RNG&, VecR&, VecI&, VecVar&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; VecR = std::vector; VecI = std::vector; VecVar = std::vector; stan::require_vector_like_vt* = 0; stan::require_vector_like_vt* = 0; stan::require_vector_vt* = 0; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:987:0: required from ‘void model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1105:0: required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15: required from ‘stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:36:15: required from ‘stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16: required from ‘stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:40:16: required from ‘stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/beta.hpp:1721, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/binomial.hpp:15, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:46, from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:14: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp: In instantiation of ‘boost::math::detail::temme_root_finder::temme_root_finder(T, T) [with T = double]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: required from ‘T boost::math::detail::temme_method_2_ibeta_inverse(T, T, T, T, T, const Policy&) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:48: required from ‘T boost::math::detail::ibeta_inv_imp(T, T, T, T, const Policy&, T*) [with T = double; Policy = boost::math::policies::policy, boost::math::policies::promote_float, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:30: required from ‘boost::math::tools::promote_args_t boost::math::ibeta_inv(T1, T2, T3, T4*, const Policy&) [with T1 = double; T2 = double; T3 = double; T4 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:20: required from ‘boost::math::tools::promote_args_t boost::math::ibeta_inv(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = policies::policy, policies::pole_error, policies::promote_double, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:32: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable ‘x_extrema’ [-Wunused-variable] 29 | const T x_extrema = 1 / (1 + a); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, member_sum, 1>; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; Func = Eigen::internal::scalar_max_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix >, Eigen::internal::member_sum, 1> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:49: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 2, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix >, 2, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix >, 2, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::Matrix >, 2, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::Matrix >, 2, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::Matrix >, 2, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:203:15: required from ‘PacketType Eigen::internal::evaluator >::packet(Eigen::Index) const [with int LoadMode = 0; PacketType = __vector(2) double; ArgType = const Eigen::CwiseUnaryOp, const Eigen::Matrix >; MemberOp = Eigen::internal::member_sum; int Direction = 1; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:251:78: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; Func = Eigen::internal::scalar_max_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix >, Eigen::internal::member_sum, 1> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:49: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:277: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::Matrix >, 2, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Matrix >, 2, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:217:20: required from ‘PacketType Eigen::internal::evaluator >::packet(Eigen::Index) const [with int LoadMode = 0; PacketType = __vector(2) double; ArgType = const Eigen::CwiseUnaryOp, const Eigen::Matrix >; MemberOp = Eigen::internal::member_sum; int Direction = 1; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:251:78: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; Func = Eigen::internal::scalar_max_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix >, Eigen::internal::member_sum, 1> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:49: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::Matrix >, 1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::Matrix >, 1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::Matrix >, 1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:72: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = const Eigen::CwiseUnaryOp, const Eigen::Matrix >; MemberOp = Eigen::internal::member_sum; int Direction = 1; Scalar = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:268:34: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; Func = Eigen::internal::scalar_max_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix >, Eigen::internal::member_sum, 1> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:49: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = false]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:100:15: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2459:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2459 | PacketBlock kernel; | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int Pack1 = 4; int Pack2 = 2; Packet = __vector(2) double; bool Conjugate = false; bool PanelMode = false]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:106:17: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2256:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2256 | typedef typename unpacket_traits::half>::half QuarterPacket; | ^~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2258:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2258 | HalfPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2259:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2259 | QuarterPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2259:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2298:39: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2298 | PacketBlock kernel_half; | ^~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2298:39: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2304 | PacketBlock kernel_quarter; | ^~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gebp_kernel::operator()(const DataMapper&, const LhsScalar*, const RhsScalar*, Index, Index, Index, ResScalar, Index, Index, Index, Index) [with LhsScalar = double; RhsScalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int mr = 4; int nr = 4; bool ConjugateLhs = false; bool ConjugateRhs = false; ResScalar = double]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:113:15: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1920:103: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1920 | const int SResPacketHalfSize = unpacket_traits::half>::size; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1921:138: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1921 | const int SResPacketQuarterSize = unpacket_traits::half>::half>::size; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1921:138: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1977:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1977 | typedef typename conditional=8,typename unpacket_traits::half,SResPacket>::type SResPacketHalf; | ^~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1978:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1978 | typedef typename conditional=8,typename unpacket_traits::half,SLhsPacket>::type SLhsPacketHalf; | ^~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1979:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1979 | typedef typename conditional=8,typename unpacket_traits::half,SRhsPacket>::type SRhsPacketHalf; | ^~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1980:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1980 | typedef typename conditional=8,typename unpacket_traits::half,SAccPacket>::type SAccPacketHalf; | ^~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:155:52: required from ‘void Eigen::internal::tribb_kernel::operator()(ResScalar*, Index, Index, const LhsScalar*, const RhsScalar*, Index, Index, const ResScalar&) [with LhsScalar = double; RhsScalar = double; Index = long int; int mr = 4; int nr = 4; bool ConjLhs = false; bool ConjRhs = false; int ResInnerStride = 1; int UpLo = 2; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:116:13: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:116:13: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:28:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:370:46: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:370:35: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:325:26: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 0>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 0>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 0>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 0>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, 0>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:325:43: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:352:35: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:358:80: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:358:67: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, 1, -1, false>, Eigen::Block, -1, 1, false>, 0, 6>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 1, -1, false>, Eigen::Block, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:359:35: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:32: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:379:56: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:387:32: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70: required from ‘stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::sqrt >(const Eigen::Matrix&)::&):: [with auto:6 = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary, void>::apply >(const Eigen::Matrix&):: >(const Eigen::Matrix&, const stan::math::sqrt >(const Eigen::Matrix&)::&)::; Args = {Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:558:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/elt_divide.hpp:61:22: required from ‘auto stan::math::elt_divide(Scal, const Mat&) [with Scal = double; Mat = Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0]’ stanExports_basics_regression_nospikes.h:557:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/elt_divide.hpp:61:13: required from ‘auto stan::math::elt_divide(Scal, const Mat&) [with Scal = double; Mat = Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0]’ stanExports_basics_regression_nospikes.h:557:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/elt_divide.hpp:61:32: required from ‘auto stan::math::elt_divide(Scal, const Mat&) [with Scal = double; Mat = Eigen::MatrixWrapper, const Eigen::ArrayWrapper > > >; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0]’ stanExports_basics_regression_nospikes.h:557:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/add.hpp:77:13: required from ‘auto stan::math::add(Scal, const Mat&) [with Scal = double; Mat = Eigen::Matrix; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0; stan::require_all_not_st_var* = 0]’ stanExports_basics_regression_nospikes.h:566:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/add.hpp:77:32: required from ‘auto stan::math::add(Scal, const Mat&) [with Scal = double; Mat = Eigen::Matrix; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0; stan::require_all_not_st_var* = 0]’ stanExports_basics_regression_nospikes.h:566:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/elt_divide.hpp:61:13: required from ‘auto stan::math::elt_divide(Scal, const Mat&) [with Scal = int; Mat = Eigen::Matrix; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0]’ stanExports_basics_regression_nospikes.h:569:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/elt_divide.hpp:61:32: required from ‘auto stan::math::elt_divide(Scal, const Mat&) [with Scal = int; Mat = Eigen::Matrix; stan::require_stan_scalar_t* = 0; stan::require_eigen_t* = 0]’ stanExports_basics_regression_nospikes.h:569:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_linesearch.hpp:247:0: required from ‘int stan::optimization::WolfeLineSearch(FunctorType&, Scalar&, XType&, Scalar&, XType&, const XType&, const XType&, const Scalar&, const XType&, const Scalar&, const Scalar&, const Scalar&, const Scalar&, const Scalar&) [with FunctorType = ModelAdaptor; Scalar = double; XType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:209:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:34:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0, 5>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:34:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, Eigen::Matrix >, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, Eigen::Matrix >, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, Eigen::Matrix >, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, Eigen::Matrix >, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, Eigen::Matrix >, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:34:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0>, Eigen::Transpose >, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0>, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 0>, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Product, Eigen::Matrix, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Product, Eigen::Matrix, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Product, Eigen::Matrix, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Product, Eigen::Matrix, 0>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Product, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:55:0: required from ‘void stan::optimization::BFGSUpdate_HInv::search_direction(VectorT&, const VectorT&) const [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:254:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = double; T2 = Eigen::Matrix, -1, 1>; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:176:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:528:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:163:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = double; T2 = Eigen::Matrix, -1, 1>; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:176:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:528:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:176:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:528:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:170:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = double; T2 = Eigen::Matrix, -1, 1>; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:176:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:528:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:172:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = double; T2 = Eigen::Matrix, -1, 1>; stan::require_not_matrix_t* = 0; stan::require_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:176:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:528:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:131:53: required from ‘auto stan::math::divide(const Mat&, Scalar) [with Scalar = var_value; Mat = Eigen::Matrix, -1, 1>; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_st_var_or_arithmetic* = 0; stan::require_any_st_var* = 0]’ stanExports_basics_regression_nospikes.h:176:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:528:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:134:39: required from ‘auto stan::math::divide(const Mat&, Scalar) [with Scalar = var_value; Mat = Eigen::Matrix, -1, 1>; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_st_var_or_arithmetic* = 0; stan::require_any_st_var* = 0]’ stanExports_basics_regression_nospikes.h:176:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:528:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:143:58: required from ‘auto stan::math::divide(const Mat&, Scalar) [with Scalar = var_value; Mat = Eigen::Matrix, -1, 1>; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_st_var_or_arithmetic* = 0; stan::require_any_st_var* = 0]’ stanExports_basics_regression_nospikes.h:176:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:528:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:143:38: required from ‘auto stan::math::divide(const Mat&, Scalar) [with Scalar = var_value; Mat = Eigen::Matrix, -1, 1>; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_st_var_or_arithmetic* = 0; stan::require_any_st_var* = 0]’ stanExports_basics_regression_nospikes.h:176:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:528:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:149:72: required from ‘auto stan::math::divide(const Mat&, Scalar) [with Scalar = var_value; Mat = Eigen::Matrix, -1, 1>; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_st_var_or_arithmetic* = 0; stan::require_any_st_var* = 0]’ stanExports_basics_regression_nospikes.h:176:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:528:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:149:53: required from ‘auto stan::math::divide(const Mat&, Scalar) [with Scalar = var_value; Mat = Eigen::Matrix, -1, 1>; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_st_var_or_arithmetic* = 0; stan::require_any_st_var* = 0]’ stanExports_basics_regression_nospikes.h:176:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:528:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/operator_division.hpp:151:51: required from ‘auto stan::math::divide(const Mat&, Scalar) [with Scalar = var_value; Mat = Eigen::Matrix, -1, 1>; stan::require_matrix_t* = 0; stan::require_stan_scalar_t* = 0; stan::require_all_st_var_or_arithmetic* = 0; stan::require_any_st_var* = 0]’ stanExports_basics_regression_nospikes.h:176:0: required from ‘Eigen::Matrix::type, T2__, typename stan::base_type::type>::type, -1, -1> model_basics_regression_nospikes_namespace::designMatrix(const int&, const T1__&, const T2__&, const T3__&, const int&, std::ostream*) [with T1__ = Eigen::Matrix, -1, 1>; T2__ = double; T3__ = Eigen::Map, 0, Eigen::Stride<0, 0> >; stan::require_all_t, stan::is_vt_not_complex, stan::is_stan_scalar, stan::is_col_vector, stan::is_vt_not_complex >* = 0; typename boost::math::tools::promote_args::type, T2__, typename stan::base_type::type>::type = stan::math::var_value; typename stan::base_type::type = stan::math::var_value; typename stan::base_type::type = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:528:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:66: required from ‘stan::math::value_of_rec, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&):: [with auto:1 = Eigen::ArrayWrapper, -1, 1> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_greater_or_equal.hpp:157:30: required from ‘void stan::math::check_greater_or_equal(const char*, const char*, const T_y&, const T_low&, Idxs ...) [with T_y = Eigen::Matrix, -1, 1>; T_low = int; stan::require_vector_t* = 0; stan::require_not_std_vector_vt* = 0; stan::require_stan_scalar_t* = 0; Idxs = {}]’ stanExports_basics_regression_nospikes.h:542:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75: required from ‘stan::math::value_of, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&):: [with auto:11 = Eigen::ArrayWrapper, -1, 1> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:58:64: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:551:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:77:40: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:551:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:77:50: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:551:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:79:62: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:551:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:94:50: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:551:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:96:35: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:551:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:99:45: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:551:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:99:59: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:551:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log >(const Eigen::Array&):: [with auto:169 = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:96:69: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:553:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:102:44: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:553:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:102:52: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:553:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:113:49: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:553:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:113:57: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:553:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:116:54: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:553:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&)::::, const Eigen::ArrayWrapper, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75: required from ‘stan::math::value_of, -1, 1> > >(Eigen::ArrayWrapper, -1, 1> >&&):: [with auto:11 = Eigen::ArrayWrapper, -1, 1> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:44:68: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/inv.hpp:55:55: required from ‘stan::math::inv >(const Eigen::Array&):: [with auto:220 = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:64:56: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/square.hpp:70:54: required from ‘stan::math::square >(const Eigen::Array&):: [with auto:239 = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:67:17: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:70:40: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:74:63: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:89:39: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:89:35: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:89:62: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:96:46: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:96:51: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:268:7: required from ‘Eigen::MapBase::ScalarWithConstIfNotLvalue& Eigen::MapBase::coeffRef(Eigen::Index) [with Derived = Eigen::Block, -1, 1, true>; ScalarWithConstIfNotLvalue = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:367:25: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:475:5: required from ‘void Eigen::internal::apply_rotation_in_the_plane(Eigen::DenseBase&, Eigen::DenseBase&, const Eigen::JacobiRotation&) [with VectorX = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; VectorY = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; OtherScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:315:40: required from ‘void Eigen::MatrixBase::applyOnTheRight(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation&) [with OtherScalar = double; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:895:24: required from ‘void Eigen::internal::tridiagonal_qr_step(RealScalar*, RealScalar*, Index, Index, Scalar*, Index) [with int StorageOrder = 0; RealScalar = double; Scalar = double; Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:548:87: required from ‘Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix; DiagType = Eigen::Matrix; SubDiagType = Eigen::Matrix; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:460:49: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:79:51: required from ‘class Eigen::internal::visitor_evaluator, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:123:17: required from ‘void Eigen::DenseBase::visit(Visitor&) const [with Visitor = Eigen::internal::min_coeff_visitor, -1, 1, false>, 0>; Derived = Eigen::Block, -1, 1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:323:14: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::minCoeff(IndexType*) const [with int NaNPropagation = 0; IndexType = long int; Derived = Eigen::Block, -1, 1, false>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:496:37: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::minCoeff(IndexType*) const [with IndexType = long int; Derived = Eigen::Block, -1, 1, false>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:563:35: required from ‘Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix; DiagType = Eigen::Matrix; SubDiagType = Eigen::Matrix; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:460:49: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:221:22: required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:74: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 1, -1, false>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 1, -1, false>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:221:22: required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:125: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1384:41: required from ‘struct Eigen::internal::evaluator_wrapper_base, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1464:8: required from ‘struct Eigen::internal::unary_evaluator, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::ArrayWrapper, -1, 1, true>, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:379:74: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1384:41: required from ‘struct Eigen::internal::evaluator_wrapper_base, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1464:8: required from ‘struct Eigen::internal::unary_evaluator, -1, 1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::ArrayWrapper, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:387:50: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:64: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:77:40: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:551:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:77:50: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:551:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:109:26: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:553:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:113:49: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:553:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:113:57: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:553:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:116:54: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:553:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:57:51: required from ‘stan::math::as_array_or_scalar, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >&>(const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >&):: [with auto:13 = const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41: required by substitution of ‘template()((declval)()...))>* > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::as_array_or_scalar, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >&>(const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >&)::; Args = {const Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >&}; stan::require_plain_type_t()((declval)()...))>* = ]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:57:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/square.hpp:70:54: required from ‘stan::math::square, const Eigen::Array > >(const Eigen::CwiseUnaryOp, const Eigen::Array >&):: [with auto:239 = Eigen::CwiseUnaryOp, const Eigen::Array >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:70:40: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:74:63: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:87:37: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:89:39: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:89:35: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > > >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:89:62: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:96:34: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:96:46: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >, const Eigen::Array >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseUnaryOp, const Eigen::Array > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:96:51: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; bool NeedToTranspose = false; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:199:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1> >::val_Op, const Eigen::Matrix, -1, -1> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1> >::val_Op, const Eigen::Matrix, -1, -1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1> >::val_Op, const Eigen::Matrix, -1, -1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, -1, -1> >::val_Op, const Eigen::Matrix, -1, -1>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, -1, -1> >::val_Op, const Eigen::Matrix, -1, -1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/LDLT_factor.hpp:27:42: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:77:37: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0>, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:78:20: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51: required from ‘stan::math::log, 0> > >(const Eigen::ArrayWrapper, 0> >&):: [with auto:169 = Eigen::ArrayWrapper, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:90:37: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/trace_inv_quad_form_ldlt.hpp:41:0: required from ‘stan::math::var stan::math::trace_inv_quad_form_ldlt(LDLT_factor&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::CwiseBinaryOp, double>, const Eigen::Matrix, -1, 1>, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_all_matrix_t* = 0; stan::require_any_st_var* = 0; var = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/trace_inv_quad_form_ldlt.hpp:43:0: required from ‘stan::math::var stan::math::trace_inv_quad_form_ldlt(LDLT_factor&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::CwiseBinaryOp, double>, const Eigen::Matrix, -1, 1>, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_all_matrix_t* = 0; stan::require_any_st_var* = 0; var = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 6>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/trace_inv_quad_form_ldlt.hpp:46:0: required from ‘stan::math::var stan::math::trace_inv_quad_form_ldlt(LDLT_factor&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::CwiseBinaryOp, double>, const Eigen::Matrix, -1, 1>, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_all_matrix_t* = 0; stan::require_any_st_var* = 0; var = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, 5>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/trace_inv_quad_form_ldlt.hpp:55:0: required from ‘stan::math::var stan::math::trace_inv_quad_form_ldlt(LDLT_factor&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::CwiseBinaryOp, double>, const Eigen::Matrix, -1, 1>, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_all_matrix_t* = 0; stan::require_any_st_var* = 0; var = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/trace_inv_quad_form_ldlt.hpp:57:0: required from ‘stan::math::var stan::math::trace_inv_quad_form_ldlt(LDLT_factor&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::CwiseBinaryOp, double>, const Eigen::Matrix, -1, 1>, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_all_matrix_t* = 0; stan::require_any_st_var* = 0; var = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 6>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135:50: required from ‘stan::math::var stan::math::accumulator::type>::value, void>::type>::sum() const [with T = stan::math::var_value; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = stan::math::var_value; stan::math::var = stan::math::var_value]’ stanExports_basics_regression_nospikes.h:576:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:116:13: required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Func = Eigen::internal::scalar_max_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:453:45: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true>, -1, 1, false>, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:93:22: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:86: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false>, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:375:18: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointRank2Update.h:34:74: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:375:18: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointRank2Update.h:35:60: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:375:18: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointRank2Update.h:35:23: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:375:18: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/trace_inv_quad_form_ldlt.hpp:36:24: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 2>, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 2>, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 2>, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, 2>, Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, 2>, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:53:0: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:388:0: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/advi.hpp:223:0: required from ‘double stan::variational::advi::adapt_eta(Q&, int, stan::callbacks::logger&) const [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/advi.hpp:468:0: required from ‘int stan::variational::advi::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/experimental/advi/meanfield.hpp:82:0: required from ‘int stan::services::experimental::advi::meanfield(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, double, double, bool, int, int, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:900:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite, 0, Eigen::Stride<0, 0> > >(const char*, const char*, const Eigen::Map, 0, Eigen::Stride<0, 0> >&)::; T = Eigen::Map, 0, Eigen::Stride<0, 0> >; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:71:17: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase, 0, Eigen::Stride<0, 0> > >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan, -1, 1> >(const char*, const char*, const Eigen::Matrix, -1, 1>&)::; T = Eigen::Matrix, -1, 1>; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix, -1, 1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:72:18: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:634:22: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:90:37: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:510:28: required from ‘typename Eigen::internal::traits::Scalar Eigen::MatrixBase::trace() const [with Derived = Eigen::Product, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/trace_inv_quad_form_ldlt.hpp:43:0: required from ‘stan::math::var stan::math::trace_inv_quad_form_ldlt(LDLT_factor&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::CwiseBinaryOp, double>, const Eigen::Matrix, -1, 1>, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_all_matrix_t* = 0; stan::require_any_st_var* = 0; var = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:510:28: required from ‘typename Eigen::internal::traits::Scalar Eigen::MatrixBase::trace() const [with Derived = Eigen::Product, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/trace_inv_quad_form_ldlt.hpp:57:0: required from ‘stan::math::var stan::math::trace_inv_quad_form_ldlt(LDLT_factor&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::CwiseBinaryOp, double>, const Eigen::Matrix, -1, 1>, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_all_matrix_t* = 0; stan::require_any_st_var* = 0; var = var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Array&)::; T = Eigen::Array; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:62:16: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:551:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite, 0, Eigen::Stride<0, 0> > > >(const char*, const char*, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >&)::; T = Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:63:15: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:551:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase, 0, Eigen::Stride<0, 0> > > >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67:0: required from ‘void stan::math::internal::update_adjoints(Matrix1&, const Matrix2&, const stan::math::var&) [with Matrix1 = stan::math::arena_matrix, -1, 1> >; Matrix2 = stan::math::arena_matrix >; stan::require_rev_matrix_t* = 0; stan::require_st_arithmetic* = 0; stan::math::var = stan::math::var_value]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:91:0: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105:28: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:551:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_positive_finite >(const char*, const char*, const Eigen::Array&)::; T = Eigen::Array; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_positive_finite.hpp:24:20: required from ‘void stan::math::check_positive_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:71:24: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:553:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_nonnegative >(const char*, const char*, const Eigen::Array&)::; T = Eigen::Array; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_nonnegative.hpp:26:20: required from ‘void stan::math::check_nonnegative(const char*, const char*, const T_y&) [with T_y = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:46:20: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Array&)::; T = Eigen::Array; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Array]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:47:15: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite, -1, 1> >(const char*, const char*, const Eigen::Matrix, -1, 1>&)::; T = Eigen::Matrix, -1, 1>; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix, -1, 1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/neg_binomial_2_log_lpmf.hpp:46:15: required from ‘stan::return_type_t stan::math::neg_binomial_2_log_lpmf(const T_n&, const T_log_location&, const T_precision&) [with bool propto = true; T_n = std::vector; T_log_location = Eigen::Matrix, -1, 1>; T_precision = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:562:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_positive_finite, -1, 1> >(const char*, const char*, const Eigen::Matrix, -1, 1>&)::; T = Eigen::Matrix, -1, 1>; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_positive_finite.hpp:24:20: required from ‘void stan::math::check_positive_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix, -1, 1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/neg_binomial_2_log_lpmf.hpp:47:24: required from ‘stan::return_type_t stan::math::neg_binomial_2_log_lpmf(const T_n&, const T_log_location&, const T_precision&) [with bool propto = true; T_n = std::vector; T_log_location = Eigen::Matrix, -1, 1>; T_precision = Eigen::MatrixWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, -1, 1> > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:562:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::Matrix >, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Matrix >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, const Eigen::Matrix >, 1, -1, false>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, const Eigen::Matrix >, 1, -1, false>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:114:1: required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, const Eigen::Matrix >, 1, -1, false>; ResultType = double; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:21: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = const Eigen::CwiseUnaryOp, const Eigen::Matrix >; MemberOp = Eigen::internal::member_sum; int Direction = 1; Scalar = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:268:34: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; Func = Eigen::internal::scalar_max_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix >, Eigen::internal::member_sum, 1> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 1>; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:49: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block >, -1, 1, true>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block >, -1, 1, true>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block >, -1, 1, true>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::Block >, -1, 1, true>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::Block >, -1, 1, true>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::Block >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45: required from ‘struct Eigen::internal::generic_product_impl, const Eigen::Block >, -1, 1, true>, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:479:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 1, -1, true>, Eigen::Transpose >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 1, -1, true>, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 1, -1, true>, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from ‘struct Eigen::internal::generic_product_impl, 1, -1, true>, Eigen::Transpose >, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:486:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:78:71: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, 1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:125: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:125: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 0>, -1, 1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 0>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:79:51: required from ‘class Eigen::internal::visitor_evaluator, const Eigen::Block, 0>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:123:17: required from ‘void Eigen::DenseBase::visit(Visitor&) const [with Visitor = Eigen::internal::max_coeff_visitor, const Eigen::Block, 0>, -1, 1, false> >, 0>; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 0>, -1, 1, false> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:374:14: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:325:54: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from ‘struct Eigen::internal::generic_product_impl, -1, -1, false>, Eigen::Block, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42: required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/NoAlias.h:59:31: required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; ExpressionType = Eigen::Block, -1, 1, false>; StorageBase = Eigen::MatrixBase]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/mdivide_left_ldlt.hpp:37:24: required from ‘Eigen::Matrix::type, -1, EigMat::ColsAtCompileTime> stan::math::mdivide_left_ldlt(LDLT_factor&, const EigMat&) [with T = Eigen::Matrix; EigMat = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::require_eigen_t* = 0; stan::require_all_not_st_var* = 0; stan::require_any_not_t::type>, stan::is_fvar::type, void> >* = 0; typename stan::return_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/trace_inv_quad_form_ldlt.hpp:36:42: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan > >(const char*, const char*, const Eigen::ArrayWrapper >&)::; T = Eigen::ArrayWrapper >; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::ArrayWrapper >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:62:16: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:551:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase > >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_positive_finite > >(const char*, const char*, const Eigen::ArrayWrapper >&)::; T = Eigen::ArrayWrapper >; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_positive_finite.hpp:24:20: required from ‘void stan::math::check_positive_finite(const char*, const char*, const T_y&) [with T_y = Eigen::ArrayWrapper >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:71:24: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:553:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase > >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_nonnegative > >(const char*, const char*, const Eigen::ArrayWrapper >&)::; T = Eigen::ArrayWrapper >; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_nonnegative.hpp:26:20: required from ‘void stan::math::check_nonnegative(const char*, const char*, const T_y&) [with T_y = Eigen::ArrayWrapper >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:46:20: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase > >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite > >(const char*, const char*, const Eigen::ArrayWrapper >&)::; T = Eigen::ArrayWrapper >; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::ArrayWrapper >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:47:15: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase > >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_positive_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_positive_finite.hpp:24:20: required from ‘void stan::math::check_positive_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/neg_binomial_2_log_lpmf.hpp:47:24: required from ‘stan::return_type_t stan::math::neg_binomial_2_log_lpmf(const T_n&, const T_log_location&, const T_precision&) [with bool propto = false; T_n = std::vector; T_log_location = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; T_precision = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:562:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:142:7: required from ‘Eigen::DenseCoeffsBase::CoeffReturnType Eigen::DenseCoeffsBase::coeff(Eigen::Index) const [with Derived = Eigen::Block, 0>, -1, 1, false>; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:182:19: required from ‘Eigen::DenseCoeffsBase::CoeffReturnType Eigen::DenseCoeffsBase::operator()(Eigen::Index) const [with Derived = Eigen::Block, 0>, -1, 1, false>; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_ldlt_factor.hpp:32:48: required from ‘void stan::math::check_ldlt_factor(const char*, const char*, LDLT_factor&) [with T = Eigen::Matrix, -1, -1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:78:20: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; SrcXprType = Eigen::Block, 1, -1, false>; Functor = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; SrcXprType = Eigen::Block, 1, -1, false>; Functor = Eigen::internal::assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, 1, -1, false>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, 1, -1, false>; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, 1, -1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from ‘Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:72:0: required from ‘int stan::services::standalone_generate(const Model&, const Eigen::MatrixXd&, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; Eigen::MatrixXd = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1253:0: required from ‘SEXPREC* rstan::stan_fit::standalone_gqs(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:30:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 16, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 16, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 16, Eigen::Stride<0, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 16, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 16, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 16, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883:25: required from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; OtherDerived = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:332:31: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850:41: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Func = add_assign_op; typename enable_if::value, void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from ‘Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:28:39: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:280:48: required from ‘void Eigen::internal::outer_product_selector_run(Dst&, const Lhs&, const Rhs&, const Func&, const false_type&) [with Dst = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Rhs = Eigen::Transpose >; Func = generic_product_impl, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, Eigen::DenseShape, Eigen::DenseShape, 5>::set]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:317:41: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883:25: required from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; OtherDerived = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:332:31: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850:41: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Func = add_assign_op; typename enable_if::value, void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from ‘Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:28:39: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose >, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Transpose >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Transpose >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose >, 1, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Transpose >, 1, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Transpose >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:462:68: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, true>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, true>, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, true>, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, true>, 1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:333: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:306:38: required from ‘struct Eigen::internal::general_matrix_vector_product, 1, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:347:132: required from ‘static void Eigen::internal::gemv_dense_selector<2, 1, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 52 | unpacket_traits<_RhsPacket>::vectorizable && | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1 | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 59 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 60 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 61 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:310:42: required from ‘struct Eigen::internal::general_matrix_vector_product, 1, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:347:132: required from ‘static void Eigen::internal::gemv_dense_selector<2, 1, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 52 | unpacket_traits<_RhsPacket>::vectorizable && | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1 | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 59 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 60 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 61 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:314:45: required from ‘struct Eigen::internal::general_matrix_vector_product, 1, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:347:132: required from ‘static void Eigen::internal::gemv_dense_selector<2, 1, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 52 | unpacket_traits<_RhsPacket>::vectorizable && | ^~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1 | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 59 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 60 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 61 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1, 6>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:29:8: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1626:36: required from ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:65:8: required from ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1, 6>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:29:8: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1626:36: required from ‘struct Eigen::internal::evaluator, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:65:8: required from ‘struct Eigen::internal::evaluator, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:26: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Functor = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Functor = Eigen::internal::assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Map, 0, Eigen::Stride<0, 0> >; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Map, 0, Eigen::Stride<0, 0> >; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CommaInitializer.h:159:10: required from ‘Eigen::CommaInitializer Eigen::DenseBase::operator<<(const Eigen::DenseBase&) [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/append_row.hpp:102:10: required from ‘Eigen::Matrix::type, -1, 1> stan::math::append_row(const ColVec&, const Scal&) [with ColVec = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scal = double; stan::require_t >* = 0; stan::require_stan_scalar_t* = 0; typename stan::return_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:29:31: required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector; Tb = std::vector; Tz = double; T_return = double; ArrayAT = Eigen::Array; ArrayBT = Eigen::Array; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector; Tb = std::vector; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, true> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block >, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:221:28: required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:74: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:54: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Block, 1, -1, false>; Rhs = Eigen::Block, -1, 1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:359:56: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix, const Eigen::Matrix > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; bool NeedToTranspose = false; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:199:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::Block >, -1, 1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::Block >, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::Block >, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::Block >, -1, 1, false>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::Block >, -1, 1, false>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::Block >, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval >, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45: required from ‘struct Eigen::internal::generic_product_impl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::Block >, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:479:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Transpose >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:113:15: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from ‘struct Eigen::internal::generic_product_impl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Transpose >, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:486:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Array, const Eigen::Array > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::Array >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:82:38: required from ‘stan::return_type_t stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:551:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::Array >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:106:16: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:553:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::Array >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:74:44: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Array >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Array >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Array > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Array >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseUnaryOp, const Eigen::Array >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:76:16: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Array; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Array; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Array; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Array; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::Array; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:79:16: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Matrix, -1, 1>; T_scale = Eigen::MatrixWrapper, var_value >, const Eigen::CwiseNullaryOp >, const Eigen::Array, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper, -1, 1>, void>::apply(const Eigen::Matrix, -1, 1>&)::, const Eigen::Matrix, -1, 1> > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 1, -1, true>; U = Eigen::Block >, -1, 1, true>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, true> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, true>, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 1, -1, true>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 1, -1, true>, 1, -1, true>; U = Eigen::Block >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false> >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:166:45: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:369:35: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, 1, false>; U = Eigen::Block, -1, 1, true>, -1, 1, false>; bool NeedToTranspose = false; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:86: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, 1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false>, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/trace_inv_quad_form_ldlt.hpp:36:53: required from ‘stan::return_type_t stan::math::trace_inv_quad_form_ldlt(LDLT_factor&, const EigMat2&) [with T = Eigen::Matrix; EigMat2 = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; = void; stan::return_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper > >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gamma_lpdf.hpp:109:16: required from ‘stan::return_type_t stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_shape = double; T_inv_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:553:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array >, const Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Array > > >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:74:44: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose >, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Transpose >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Transpose >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose >, 1, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Transpose >, 1, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Transpose >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:469:72: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Product, Eigen::Transpose >, 1> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Product, Eigen::Transpose >, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Product, Eigen::Transpose >, 1> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Product, Eigen::Transpose >, 1>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Product, Eigen::Transpose >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:469:55: required from ‘static void Eigen::internal::generic_product_impl::eval_dynamic_impl(Dst&, const LhsT&, const RhsT&, const Func&, const Scalar&, Eigen::internal::true_type) [with Dst = Eigen::Matrix; LhsT = Eigen::Matrix; RhsT = Eigen::Transpose >; Func = Eigen::internal::assign_op; Scalar = double; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:446:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, false>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, false>, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:43: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:78:71: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 2, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 2, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 2, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:369:35: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:375:18: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator >, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:296:40: required from ‘static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; Dest = Eigen::Block, -1, 1, false>; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43: required from ‘static void Eigen::internal::gemv_dense_selector<1, StorageOrder, BlasCompatible>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>; Rhs = Eigen::Transpose >; Dest = Eigen::Block, 1, -1, false>; int StorageOrder = 1; bool BlasCompatible = true; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, true>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 1, -1, true>, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:31: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator > >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_)>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_concepts.hpp:114:7: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::Convertible]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_concepts.hpp:114:7: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator > >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_)>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:152:13: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::Convertible]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:152:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:278:9: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >)>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:278:9: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:278:9: required from ‘struct boost::SinglePassRangeConcept > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > > >)>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/algorithm/equal.hpp:174:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:284:9: required from ‘struct boost::SinglePassRangeConcept > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > > >)>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/algorithm/equal.hpp:174:13: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept > > >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::SinglePassRangeConcept > > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/algorithm/equal.hpp:174:13: required from ‘bool boost::range::equal(const SinglePassRange1&, const SinglePassRange2&) [with SinglePassRange1 = boost::iterator_range<__gnu_cxx::__normal_iterator > >; SinglePassRange2 = boost::iterator_range<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/iterator_range_core.hpp:644:32: required from ‘bool boost::operator==(const iterator_range&, const iterator_range&) [with Iterator1T = __gnu_cxx::__normal_iterator >; Iterator2T = __gnu_cxx::__normal_iterator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/find_iterator.hpp:359:32: required from ‘bool boost::algorithm::split_iterator::equal(const boost::algorithm::split_iterator&) const [with IteratorT = __gnu_cxx::__normal_iterator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:649:26: required from ‘static bool boost::iterators::iterator_core_access::equal(const Facade1&, const Facade2&, mpl_::true_) [with Facade1 = boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >; Facade2 = boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >; mpl_::true_ = mpl_::bool_]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:981:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator==(const iterator_facade&, const iterator_facade&) [with Derived1 = boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >; V1 = const boost::iterator_range<__gnu_cxx::__normal_iterator > >; TC1 = forward_traversal_tag; Reference1 = const boost::iterator_range<__gnu_cxx::__normal_iterator > >&; Difference1 = long int; Derived2 = boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >; V2 = const boost::iterator_range<__gnu_cxx::__normal_iterator > >; TC2 = forward_traversal_tag; Reference2 = const boost::iterator_range<__gnu_cxx::__normal_iterator > >&; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_adaptor.hpp:305:29: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = const boost::iterator_range<__gnu_cxx::__normal_iterator > >]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:74: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = false; Lhs = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:337: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In instantiation of ‘static void Eigen::internal::selfadjoint_matrix_vector_product::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7: required from ‘static void Eigen::internal::selfadjoint_product_impl::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:805:109: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; int ProductTag = 7; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:369:35: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:62:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 62 | conj_helper::IsComplex && EIGEN_LOGICAL_XOR(ConjugateLhs, IsRowMajor), ConjugateRhs> pcj0; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:62:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:63:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 63 | conj_helper::IsComplex && EIGEN_LOGICAL_XOR(ConjugateLhs, !IsRowMajor), ConjugateRhs> pcj1; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:63:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, -1, false>, 1, -1, false>; U = Eigen::Block, -1, 1, false>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>; U = Eigen::Block >, -1, 1, false>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true>; U = Eigen::Block >, -1, 1, false>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true>; U = Eigen::Block >, -1, 1, false>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:506:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘struct Eigen::internal::gemm_pack_rhs, 4, 1, false, false>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:81:75: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 0; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 1; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:230:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:114:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor, Eigen::Matrix, Eigen::Transpose >, Eigen::Matrix, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:509:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2504:50: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2504 | typedef typename unpacket_traits::half HalfPacket; | ^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2505:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2505 | typedef typename unpacket_traits::half>::half QuarterPacket; | ^~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2505:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2508:56: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2508 | HalfPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2508:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2509 | QuarterPacketSize = unpacket_traits::size}; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:332:45: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:332:58: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:332:45: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:37: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 6; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1632:27: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:52: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 6; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1632:27: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:37: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 6; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1632:27: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:52: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 6; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1632:27: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:52: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; int ProductTag = 8; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Matrix; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Transpose >; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654:63: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::CopyConstructible::~CopyConstructible() [with TT = __gnu_cxx::__normal_iterator >]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:167:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 167 | BOOST_CONCEPT_USAGE(CopyConstructible) { | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::IncrementableIteratorConcept::~IncrementableIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:136:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::EqualityComparable::~EqualityComparable() [with TT = __gnu_cxx::__normal_iterator >]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:233:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 233 | BOOST_CONCEPT_USAGE(EqualityComparable) { | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept > > >]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:284:9: required from ‘struct boost::SinglePassRangeConcept > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept > > >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > > > >::value’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3: required from ‘typename boost::iterators::detail::enable_if_interoperable::type>::type boost::iterators::operator!=(const iterator_facade&, const iterator_facade&) [with Derived1 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string; Difference1 = long int; Derived2 = transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string; Difference2 = long int; typename detail::enable_if_interoperable::type>::type = bool; typename boost::mpl::apply2::type = bool]’ /usr/include/c++/13/bits/stl_vector.h:1671:21: required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ /usr/include/c++/13/bits/stl_vector.h:711:23: required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator, __gnu_cxx::__normal_iterator > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator > >, boost::use_default, boost::use_default>; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >; allocator_type = std::allocator >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31: required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; FinderT = detail::token_finderF >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50: required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector >; RangeT = std::__cxx11::basic_string&; PredicateT = detail::is_any_ofF]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = const boost::iterator_range<__gnu_cxx::__normal_iterator > >]’ 37 | ~model() | ^ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) | ^~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:303:32: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:166: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h: In instantiation of ‘Index Eigen::internal::first_default_aligned(const Scalar*, Index) [with Scalar = double; Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:89:68: required from ‘static void Eigen::internal::selfadjoint_matrix_vector_product::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7: required from ‘static void Eigen::internal::selfadjoint_product_impl::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:805:109: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; int ProductTag = 7; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:369:35: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:500:60: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 500 | return first_aligned::alignment>(array, size); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:27: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:170:53: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0, 5>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:170:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:41: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:131:25: required from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, -1, false>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:132:29: required from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, -1, false>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 5>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:132:41: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block >, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>; Derived = Eigen::Block >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:332:31: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850:41: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>; Func = assign_op; typename enable_if::value, void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:779:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 1, -1, false>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:332:31: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850:41: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>; Func = assign_op; typename enable_if::value, void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:779:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:26:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int Pack1 = 4; int Pack2 = 2; Packet = __vector(2) double; bool Conjugate = false; bool PanelMode = false]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:184:17: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 0; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 1; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:230:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:114:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor, Eigen::Matrix, Eigen::Transpose >, Eigen::Matrix, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:509:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2100:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2100 | typedef typename unpacket_traits::half>::half QuarterPacket; | ^~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2102:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2102 | HalfPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2103 | QuarterPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:328:36: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, -1, false>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, -1, false>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:328:36: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> > >, 1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:70: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:577:26: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:90:37: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:610:38: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:90:37: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 1, -1, true>; U = Eigen::Block >, -1, 1, true>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block >, -1, 1, true>, -1, 1, true>; Derived = Eigen::Block, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true>, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 1, -1, true>, 1, -1, true>; U = Eigen::Block >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block >, -1, 1, true>; Derived = Eigen::Block, 1, -1, true>, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = true]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:346:25: required from ‘static void Eigen::internal::product_triangular_matrix_matrix::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 1; int LhsStorageOrder = 1; bool ConjugateLhs = false; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = false; Lhs = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>; int ProductTag = 8; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>; Derived = Eigen::internal::generic_product_impl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, Eigen::DenseShape, Eigen::TriangularShape, 8>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>; Derived = Eigen::internal::generic_product_impl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, Eigen::DenseShape, Eigen::TriangularShape, 8>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2459:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2459 | PacketBlock kernel; | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:96: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 2>, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 2>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 2>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 2>, Eigen::Matrix, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 2>, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 2>, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:101:66: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1>, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base >, 1>, Eigen::Matrix, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl >, 1>, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, 1>, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:102:66: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 5>, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 5>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 5>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, 5>, Eigen::Matrix, 0, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false>, 5>, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14: required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10: required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67: required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix; stan::require_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 2, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:577:26: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, Eigen::Matrix, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >, Eigen::Matrix, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >, Eigen::Matrix, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base > >, Eigen::Matrix, 2, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl > >, Eigen::Matrix, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product > >, Eigen::Matrix, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:610:38: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, false>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘struct Eigen::internal::gemm_pack_rhs, 4, 1, false, true>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverMatrix.h:233:85: required from ‘static void Eigen::internal::triangular_solve_matrix::run(Index, Index, const Scalar*, Index, Scalar*, Index, Index, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 2; bool Conjugate = false; int TriStorageOrder = 1; int OtherInnerStride = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; int Side = 2; int Mode = 2]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 2; OtherDerived = Eigen::Block, -1, -1, false>; _MatrixType = const Eigen::Transpose, -1, -1, false> >; unsigned int _Mode = 2]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:364:96: required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:408:68: required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:456:42: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2504:50: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2504 | typedef typename unpacket_traits::half HalfPacket; | ^~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2505:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2505 | typedef typename unpacket_traits::half>::half QuarterPacket; | ^~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2505:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2508:56: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2508 | HalfPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2508:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2509 | QuarterPacketSize = unpacket_traits::size}; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> > >, 1, -1, true> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = true; Lhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, -1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = true; Lhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Diagonal, 0>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Diagonal, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:303:42: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, true>, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, 1, true>, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:63:90: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:63:57: required from ‘void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:64:57: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:73:50: required from ‘void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:67: required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, 1, 1, false>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:599:18: required from ‘void Eigen::LDLT::_solve_impl_transposed(const RhsType&, DstType&) const [with bool Conjugate = true; RhsType = Eigen::Matrix; DstType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:569:31: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, const Eigen::Block >, -1, 1, false>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, const Eigen::Block >, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, const Eigen::Block >, -1, 1, false>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0>, const Eigen::Block >, -1, 1, false>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0>, const Eigen::Block >, -1, 1, false>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 0>, const Eigen::Block >, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Transpose >, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Transpose >, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Transpose >, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Transpose >, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Transpose >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, Eigen::Matrix, 0>, 1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, Eigen::Matrix, 0>, 1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, Eigen::Matrix, 0>, 1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:113:15: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, Eigen::Matrix, 0>, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, Eigen::Matrix, 0>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from ‘struct Eigen::internal::generic_product_impl, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Transpose >, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:486:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Product, Eigen::Matrix, 0>; Rhs = Eigen::Transpose >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, Eigen::Matrix, 0>; Rhs = Eigen::Transpose >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, -1, -1, false>, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from ‘struct Eigen::internal::generic_product_impl, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42: required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Transpose, -1, -1, false>, 1, -1, false> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, 1, false>; Src = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/NoAlias.h:59:31: required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, 1, false>; StorageBase = Eigen::MatrixBase]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:332:38: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int Pack1 = 4; int Pack2 = 2; Packet = __vector(2) double; bool Conjugate = false; bool PanelMode = true]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverMatrix.h:319:27: required from ‘static void Eigen::internal::triangular_solve_matrix::run(Index, Index, const Scalar*, Index, Scalar*, Index, Index, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 2; bool Conjugate = false; int TriStorageOrder = 1; int OtherInnerStride = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; int Side = 2; int Mode = 2]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 2; OtherDerived = Eigen::Block, -1, -1, false>; _MatrixType = const Eigen::Transpose, -1, -1, false> >; unsigned int _Mode = 2]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:364:96: required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:408:68: required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:456:42: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2100:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2100 | typedef typename unpacket_traits::half>::half QuarterPacket; | ^~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2102:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2102 | HalfPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2103 | QuarterPacketSize = unpacket_traits::size, | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> > >, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 0, Eigen::Stride<0, 0> > >, 1, -1, true>; U = Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 0, Eigen::Stride<0, 0> > >, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:48:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::CwiseUnaryView, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:577:26: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, 1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, 1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:610:38: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, 2>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, 2> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, 2, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, 2, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::CwiseUnaryOp, -1, 1>&>(const Eigen::Matrix, -1, 1>&)::::, const Eigen::Matrix, -1, 1> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:577:26: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 2; bool LhsIsTriangular = false; Lhs = Eigen::Matrix; Rhs = const Eigen::Transpose >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 2; bool LhsIsTriangular = false; Lhs = Eigen::Matrix; Rhs = const Eigen::Transpose >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:150:68: required from ‘static void Eigen::internal::product_triangular_matrix_matrix::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 1; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 1; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = true; Lhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:32: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:179:81: required from ‘class Eigen::DenseBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:32: required from ‘static void Eigen::internal::product_triangular_matrix_matrix::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 1; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 1; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = true; Lhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45: required from ‘struct Eigen::internal::generic_product_impl, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Func = assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/NoAlias.h:43:31: required from ‘ExpressionType& Eigen::NoAlias::operator=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; ExpressionType = Eigen::Map, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:52: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; int ProductTag = 8; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Matrix; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Transpose >; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:769:69: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, Eigen::Transpose >, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, Eigen::Transpose >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, Eigen::Transpose >, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0>, Eigen::Transpose >, 1, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0>, Eigen::Transpose >, 1, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 0>, Eigen::Transpose >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:462:68: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:444:18: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:43: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, 1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:38:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:70: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:43: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:303:32: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, true> >, const Eigen::Block >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:75: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; int ProductTag = 8; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Matrix; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Transpose >; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654:63: required from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator >; SrcEvaluatorTypeT = Eigen::internal::evaluator, Eigen::Transpose >, 1> >; Functor = Eigen::internal::assign_op; int Version = 1; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:668:16: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false>; Derived = Eigen::Block, -1, -1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Derived = Eigen::Block, -1, -1, true>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:32: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::TriangularShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18: required from ‘Derived& Eigen::DenseBase::operator+=(const Eigen::EigenBase&) [with OtherDerived = Eigen::TriangularView, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:142:7: required from ‘Eigen::DenseCoeffsBase::CoeffReturnType Eigen::DenseCoeffsBase::coeff(Eigen::Index) const [with Derived = Eigen::Block, -1, 1, false>; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:182:19: required from ‘Eigen::DenseCoeffsBase::CoeffReturnType Eigen::DenseCoeffsBase::operator()(Eigen::Index) const [with Derived = Eigen::Block, -1, 1, false>; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:63:53: required from ‘void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from ‘void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from ‘void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:320:29: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28: required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, -1, -1, false>, -1, 1, false>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:333:21: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::OuterStride<> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:39:18: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, 1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:57: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:72: required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 2; bool Conjugate = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:44:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:366:52: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:366:43: required from ‘static void Eigen::internal::gemv_dense_selector<2, 0, false>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::CwiseUnaryOp, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; Dest = Eigen::Matrix; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:151:29: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Diagonal, 0>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Diagonal, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:42: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block, -1, -1, false>, -1, 1, true>; Functor = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block, -1, -1, false>, -1, 1, true>; Functor = Eigen::internal::add_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, -1, -1, false>, -1, 1, true>; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, -1, -1, false>, -1, 1, true>; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from ‘Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, -1, -1, false>, -1, 1, true>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:168:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::OuterStride<> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:97:18: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:125:66: required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 5; bool Conjugate = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Matrix, 0>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, Eigen::Matrix, 0>, 1, -1, false>; U = Eigen::Block >, -1, 1, false>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, Eigen::Matrix, 0>, 1, -1, false>; U = Eigen::Block >, -1, 1, false>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true>; U = Eigen::Block >, -1, 1, false>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true>; U = Eigen::Block >, -1, 1, false>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false> >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false> >, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, false>, 1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, -1, false>, 1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 1, -1, false> >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, 1, -1, false> >, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:38:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>; U = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:38:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>; U = Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false>; U = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false>; U = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = true]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverMatrix.h:155:19: required from ‘static void Eigen::internal::triangular_solve_matrix::run(Index, Index, const Scalar*, Index, Scalar*, Index, Index, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 5; bool Conjugate = false; int TriStorageOrder = 0; int OtherInnerStride = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Matrix; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Side = 1; int Mode = 5]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = const Eigen::Matrix; unsigned int _Mode = 5]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:522:37: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = const Eigen::Matrix; unsigned int _Mode = 5]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:581:60: required from ‘void Eigen::LDLT::_solve_impl_transposed(const RhsType&, DstType&) const [with bool Conjugate = true; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; DstType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:569:31: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:90:37: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2459:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2459 | PacketBlock kernel; | ^~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28: required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, -1, false>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:599:18: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:90:37: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:301:29: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false>, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false> >, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false> >, 1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, -1, false>, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28: required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, 1, 1, false>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:599:18: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 0, Eigen::Stride<0, 0> > >, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>; Derived = Eigen::Block, 0, Eigen::Stride<0, 0> > >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:48:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>; Derived = Eigen::Block, -1, -1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20: required from ‘stan::math::arena_matrix::type>::value, void>::type>& stan::math::arena_matrix::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11: required from ‘stan::math::arena_matrix::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t* = 0; MatrixType = Eigen::Matrix; typename std::enable_if::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9: required from ‘stan::math::vari_value::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::type, typename stan::plain_type::type>, stan::is_eigen_dense_base >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix; typename stan::plain_type::type = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26: required from ‘stan::math::var_value::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t* = 0; T = Eigen::Matrix; typename std::enable_if::value || stan::is_kernel_expression_and_not_scalar::value) && std::is_floating_point::type>::value)>::value, void>::type = void; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0: required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value >; stan::require_rev_matrix_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false>, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:26: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, 1, false> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >; Functor = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >; Functor = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >; Functor = Eigen::internal::add_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, Eigen::Matrix, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, -1, false>, 1, -1, false>; U = Eigen::Block, 1, -1, false> >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, -1, -1, false>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, -1, false>, -1, -1, false>, 1, -1, false>; U = Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:38:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28: required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:599:18: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true>; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true>; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true>; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, -1, -1, true>; Derived = Eigen::Block, -1, -1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27: required from ‘stan::ref_type_t stan::math::to_ref(T&&) [with T = const Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >&; stan::ref_type_t = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29: required from ‘Eigen::Matrix::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose, Eigen::TriangularView >, 2>, 0> >; stan::require_eigen_vt* = 0; typename stan::value_type::type = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20: required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product, Eigen::TriangularView >, 2>, 0>; stan::require_eigen_t* = 0]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, -1, false>, -1, -1, false>, 1, -1, false>; U = Eigen::Block, -1, 1, false>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 1, -1, true> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, 1, false> >, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, 1, false> >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, 1, false> >, 1, -1, true>; U = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block, -1, -1, false>; Rhs = Eigen::Matrix; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:127: required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 2; bool Conjugate = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Transpose >; Rhs = Eigen::Matrix; int Side = 1; int Mode = 2]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, true>, 1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false>, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:32: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:48: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, 1, -1, true>, 1, -1, false>; int Mode = 5; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = const Eigen::Block, -1, -1, false>, -1, -1, false>; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >; Functor = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >; Functor = Eigen::internal::add_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >; Func = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from ‘Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >; Derived = Eigen::Block, -1, 1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:296:25: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, const Eigen::Block, -1, 1, true>, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, const Eigen::Block, -1, 1, true>, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, const Eigen::Block, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45: required from ‘struct Eigen::internal::generic_product_impl, const Eigen::Block, -1, 1, true>, Eigen::DenseShape, Eigen::DenseShape, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:479:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, Eigen::Matrix, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false>, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 1, -1, false>, Eigen::Matrix, 0, 7>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 1, -1, false>, Eigen::Matrix, 0, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 1, -1, false>, Eigen::Matrix, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 1, -1, false> >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, 1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, 1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, -1, false>, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, 1, -1, false> >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0: required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; size_t = long unsigned int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0: required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >; Functor = add_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >; Functor = Eigen::internal::add_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply.hpp:68:0: required from ‘auto stan::math::multiply(const T1&, const T2&) [with T1 = Eigen::Matrix, -1, -1>; T2 = Eigen::Matrix, -1, 1>; stan::require_all_matrix_t* = 0; stan::require_return_type_t* = 0; stan::require_not_row_and_col_vector_t* = 0]’ stanExports_basics_regression_nospikes.h:527:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false> >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, 1, false> >, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false> >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false> >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:506:13: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, true>, 1, -1, false> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, true>, 1, -1, false> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 24 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:341:54: required from ‘static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 6; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, -1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false> >, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false> >, -1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 6; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 1>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 1> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 1, 8>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 1, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:462:68: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true>, -1, 1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false>, 1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > >; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > >; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 16, Eigen::Stride<0, 0> > >; Derived = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:305:153: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<> >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<> >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::InnerStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::InnerStride<> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::InnerStride<> >, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, -1, 1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, -1, 1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:137:106: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:137:77: required from ‘static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:32: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, 1, false> >, 1, -1, true>; U = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; Derived = Eigen::Block, -1, 1, false> >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 1, -1, false>; U = Eigen::Block, -1, 1, true>, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, true> >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, false>, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false>, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false>, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false>, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false>, 1, -1, true> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false>, 1, -1, true> >, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 1, -1, false>, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 24 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:151:29: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Derived = Eigen::Block, -1, -1, false>, -1, -1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Derived = Eigen::Block, -1, -1, false>, -1, -1, true>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:32: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 25 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 2; bool LhsIsTriangular = true; Lhs = Eigen::Matrix; Rhs = Eigen::Matrix; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, -1, -1, true>, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, -1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, -1, true, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 25 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose >; Rhs = Eigen::Matrix; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::Block, -1, 1, true>; Functor = swap_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::Block, -1, 1, true>; Functor = Eigen::internal::swap_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::Block, -1, 1, true>; Func = swap_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::Block, -1, 1, true>; Func = swap_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:424:22: required from ‘void Eigen::DenseBase::swap(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; Derived = Eigen::Block, -1, 1, true>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:1129:51: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0: required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 1, -1, false>, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, false>, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 25 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; SrcXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Functor = swap_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; SrcXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Functor = Eigen::internal::swap_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Src = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Func = swap_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Src = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Func = swap_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:424:22: required from ‘void Eigen::DenseBase::swap(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Derived = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:1129:51: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:45: required from ‘stan::return_type_t stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix, -1, 1>; T_loc = Eigen::Map, 0, Eigen::Stride<0, 0> >; T_covar = Eigen::Matrix, -1, -1>; stan::return_type_t = var_value]’ stanExports_basics_regression_nospikes.h:548:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector, std::allocator > >; VecI = std::vector; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = stan::math::var_value; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:998:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0: required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0: required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:23:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:137:114: required from ‘static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: required from ‘static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: [ skipping 37 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 35 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, false> >, -1, 1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Derived = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:341:27: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Func = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Derived = Eigen::Block, -1, -1, false>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false> >, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false> >, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:52: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix; Rhs = Eigen::Matrix; int ProductTag = 8; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Matrix; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; CoeffReturnType = double; Eigen::Index = long int]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654:63: [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0: required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0: required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0: required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; bool jacobian = false]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0: required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0: required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’ stanExports_basics_regression_nospikes.cc:15:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 26 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, -1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> >; Functor = sub_assign_op]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 26 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11: required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55: required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39: required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14: required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7: required from ‘class Eigen::CwiseUnaryViewImpl, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: required from ‘class Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/sum.hpp:32:18: required from ‘stan::math::sum > >(const std::vector, arena_allocator > >&):: mutable [with auto:446 = stan::math::internal::callback_vari > >(const std::vector, arena_allocator > >&):: >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21:43: required from ‘void stan::math::internal::callback_vari::chain() [with T = double; F = stan::math::sum > >(const std::vector, arena_allocator > >&)::]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21:15: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/nuts/base_nuts.hpp:175:0: required from ‘stan::mcmc::sample stan::mcmc::base_nuts::transition(stan::mcmc::sample&, stan::callbacks::logger&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/nuts/base_nuts.hpp:78:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; bool NeedToTranspose = false; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:0: required from ‘double stan::mcmc::diag_e_metric::T(stan::mcmc::diag_e_point&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:20:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, const Eigen::ArrayWrapper > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, const Eigen::ArrayWrapper > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, const Eigen::ArrayWrapper > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:70:40: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = false; VecR = Eigen::Matrix; VecI = Eigen::Matrix; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:993:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(Eigen::Matrix&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:115:0: required from ‘double stan::model::model_base_crtp::log_prob_propto(Eigen::VectorXd&, std::ostream*) const [with M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; Eigen::VectorXd = Eigen::Matrix; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:113:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:39: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:54: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; bool NeedToTranspose = false; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:0: required from ‘double stan::mcmc::diag_e_metric::T(stan::mcmc::diag_e_point&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:20:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::ArrayWrapper > > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15: required from ‘stan::value_type_t stan::math::sum(const T&) [with T = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >; stan::require_eigen_vt* = 0; stan::value_type_t = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/lognormal_lpdf.hpp:79:16: required from ‘stan::return_type_t stan::math::lognormal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_scale = Eigen::MatrixWrapper, const Eigen::CwiseNullaryOp, const Eigen::Array >, const Eigen::ArrayWrapper, const Eigen::ArrayWrapper > > > > > >; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t* = 0; stan::return_type_t = double]’ stanExports_basics_regression_nospikes.h:556:0: required from ‘stan::scalar_type_t model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = false; VecR = Eigen::Matrix; VecI = Eigen::Matrix; stan::require_vector_like_t* = 0; stan::require_vector_like_vt* = 0; stan::scalar_type_t = double; std::ostream = std::basic_ostream]’ stanExports_basics_regression_nospikes.h:993:0: required from ‘T_ model_basics_regression_nospikes_namespace::model_basics_regression_nospikes::log_prob(Eigen::Matrix&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:115:0: required from ‘double stan::model::model_base_crtp::log_prob_propto(Eigen::VectorXd&, std::ostream*) const [with M = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; Eigen::VectorXd = Eigen::Matrix; std::ostream = std::basic_ostream]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:113:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true, false>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:43: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43: required from ‘static void Eigen::internal::gemv_dense_selector<1, StorageOrder, BlasCompatible>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; int StorageOrder = 0; bool BlasCompatible = true; typename Dest::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase > >, 2>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, Eigen::Dense>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:506:13: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 0>’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 1>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 3>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, true>, 0>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> > >’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]’: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true>; U = Eigen::Block, -1, 1, true>; ResScalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>; Derived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Scalar = double]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_basics_regression_nospikes_namespace::model_basics_regression_nospikes; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o BASiCStan.so RcppExports.o stanExports_basics_regression.o stanExports_basics_regression_nospikes.o -L/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/lib/ -Wl,-rpath,/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/lib/ -ltbb -ltbbmalloc -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR installing to /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-BASiCStan/00new/BASiCStan/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BASiCStan)