############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnVIL ### ############################################################################## ############################################################################## * checking for file ‘AnVIL/DESCRIPTION’ ... OK * preparing ‘AnVIL’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘BiocDockstore.Rmd’ using rmarkdown Error: processing vignette 'BiocDockstore.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘BiocDockstore.Rmd’ --- re-building ‘Introduction.Rmd’ using rmarkdown Error: processing vignette 'Introduction.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found --- failed re-building ‘Introduction.Rmd’ --- re-building ‘RunningWorkflow.Rmd’ using rmarkdown Error: processing vignette 'RunningWorkflow.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found Error in eval(x, envir = envir) : object 'has_gcloud' not found --- failed re-building ‘RunningWorkflow.Rmd’ SUMMARY: processing the following files failed: ‘BiocDockstore.Rmd’ ‘Introduction.Rmd’ ‘RunningWorkflow.Rmd’ Error: Vignette re-building failed. Execution halted