############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data simpleSingleCell ### ############################################################################## ############################################################################## * checking for file ‘simpleSingleCell/DESCRIPTION’ ... OK * preparing ‘simpleSingleCell’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘batch.Rmd’ using rmarkdown --- finished re-building ‘batch.Rmd’ --- re-building ‘bigdata.Rmd’ using rmarkdown --- finished re-building ‘bigdata.Rmd’ --- re-building ‘de.Rmd’ using rmarkdown --- finished re-building ‘de.Rmd’ --- re-building ‘doublets.Rmd’ using rmarkdown --- finished re-building ‘doublets.Rmd’ --- re-building ‘intro.Rmd’ using rmarkdown --- finished re-building ‘intro.Rmd’ --- re-building ‘misc.Rmd’ using rmarkdown Quitting from misc.Rmd:50-78 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `bfcrpath()`: ! not all 'rnames' found or unique. --- Backtrace: ▆ 1. ├─BiocFileCache::bfcrpath(...) 2. └─BiocFileCache::bfcrpath(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'misc.Rmd' failed with diagnostics: not all 'rnames' found or unique. --- failed re-building ‘misc.Rmd’ --- re-building ‘multibatch.Rmd’ using rmarkdown --- finished re-building ‘multibatch.Rmd’ --- re-building ‘qc.Rmd’ using rmarkdown --- finished re-building ‘qc.Rmd’ --- re-building ‘reads.Rmd’ using rmarkdown --- finished re-building ‘reads.Rmd’ --- re-building ‘spike.Rmd’ using rmarkdown --- finished re-building ‘spike.Rmd’ --- re-building ‘tenx.Rmd’ using rmarkdown --- finished re-building ‘tenx.Rmd’ --- re-building ‘umis.Rmd’ using rmarkdown --- finished re-building ‘umis.Rmd’ --- re-building ‘var.Rmd’ using rmarkdown --- finished re-building ‘var.Rmd’ SUMMARY: processing the following file failed: ‘misc.Rmd’ Error: Vignette re-building failed. Execution halted