############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis ### ############################################################################## ############################################################################## * checking for file ‘methylationArrayAnalysis/DESCRIPTION’ ... OK * preparing ‘methylationArrayAnalysis’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘methylationArrayAnalysis.Rmd’ using rmarkdown Quitting from methylationArrayAnalysis.Rmd:514-523 [gentracks] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `if (file == "" || length(file) == 0) ...`: ! missing value where TRUE/FALSE needed --- Backtrace: ▆ 1. └─Gviz::UcscTrack(...) 2. └─Gviz:::.cacheTracks(...) 3. ├─Gviz::.doCache(...) 4. │ ├─BiocGenerics::eval(expression, envir = callEnv) 5. │ └─base::eval(expression, envir = callEnv) 6. │ └─base::eval(expression, envir = callEnv) 7. ├─rtracklayer::trackNames(ucscTableQuery(session)) 8. └─rtracklayer::trackNames(ucscTableQuery(session)) 9. └─rtracklayer (local) .local(object, ...) 10. └─rtracklayer:::ucscTableTracks(object@genome) 11. └─rtracklayer:::rtracklayerGET(url, query = list(db = genome, hgta_group = "allTracks")) 12. └─rtracklayer:::htmlParse(content(response, as = "text")) 13. ├─base::suppressWarnings(...) 14. │ └─base::withCallingHandlers(...) 15. └─XML::htmlTreeParse(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'methylationArrayAnalysis.Rmd' failed with diagnostics: missing value where TRUE/FALSE needed --- failed re-building ‘methylationArrayAnalysis.Rmd’ SUMMARY: processing the following file failed: ‘methylationArrayAnalysis.Rmd’ Error: Vignette re-building failed. Execution halted