############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL mammaPrintData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘mammaPrintData’ ... ** this is package ‘mammaPrintData’ version ‘1.43.0’ ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices # Bootstrapping renv 0.17.3 -------------------------------------------------- * Downloading renv 0.17.3 ... OK * Installing renv 0.17.3 ... Done! Error installing renv: ====================== * installing *source* package ‘renv’ ... ** this is package ‘renv’ version ‘0.17.3’ ** package ‘renv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path ERROR: hard-coded installation path: please report to the package maintainer and use ‘--no-staged-install’ * removing ‘/home/biocbuild/.cache/R/renv/library/mammaPrintData-ed71d7f0/R-4.5-r87609/x86_64-pc-linux-gnu/renv’ Warning messages: 1: In system2(r, args, stdout = TRUE, stderr = TRUE) : running command ''/home/biocbuild/bbs-3.21-bioc/R/bin/R' --vanilla CMD INSTALL --no-multiarch -l '/home/biocbuild/.cache/R/renv/library/mammaPrintData-ed71d7f0/R-4.5-r87609/x86_64-pc-linux-gnu' '/tmp/Rtmp07ChfR/renv_0.17.3.tar.gz' 2>&1' had status 1 2: Failed to find an renv installation: the project will not be loaded. Use `renv::activate()` to re-initialize the project. ** installing vignettes ** testing if installed package can be loaded from temporary location # Bootstrapping renv 0.17.3 -------------------------------------------------- * Downloading renv 0.17.3 ... OK * Installing renv 0.17.3 ... Done! Error installing renv: ====================== * installing *source* package ‘renv’ ... ** this is package ‘renv’ version ‘0.17.3’ ** package ‘renv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path ERROR: hard-coded installation path: please report to the package maintainer and use ‘--no-staged-install’ * removing ‘/home/biocbuild/.cache/R/renv/library/mammaPrintData-ed71d7f0/R-4.5-r87609/x86_64-pc-linux-gnu/renv’ Warning messages: 1: In system2(r, args, stdout = TRUE, stderr = TRUE) : running command ''/home/biocbuild/bbs-3.21-bioc/R/bin/R' --vanilla CMD INSTALL --no-multiarch -l '/home/biocbuild/.cache/R/renv/library/mammaPrintData-ed71d7f0/R-4.5-r87609/x86_64-pc-linux-gnu' '/tmp/Rtmp9TDCxa/renv_0.17.3.tar.gz' 2>&1' had status 1 2: Failed to find an renv installation: the project will not be loaded. Use `renv::activate()` to re-initialize the project. ** testing if installed package can be loaded from final location # Bootstrapping renv 0.17.3 -------------------------------------------------- * Downloading renv 0.17.3 ... OK * Installing renv 0.17.3 ... Done! * Successfully installed and loaded renv 0.17.3. ℹ Using R 4.5.0 (lockfile was generated with R 4.2.3) Retrieving 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/BiocManager_1.30.25.tar.gz' ... OK [downloaded 579.5 Kb in 0.39 seconds] Installing BiocManager [1.30.25] ... OK [built from source in 2.2 seconds] Moving BiocManager [1.30.25] into the cache ... OK [moved to cache in 6.3 milliseconds] * Installed 1 package in 4.2 seconds. Warning message: This project is configured to use Bioconductor 3.15, which is not compatible with R 4.5.0. Use 'renv::init(bioconductor = "3.15")' to re-initialize this project with the appropriate Bioconductor release. ** testing if installed package keeps a record of temporary installation path * DONE (mammaPrintData)