############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data EpiTxDb.Mm.mm10 ### ############################################################################## ############################################################################## * checking for file ‘EpiTxDb.Mm.mm10/DESCRIPTION’ ... OK * preparing ‘EpiTxDb.Mm.mm10’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘EpiTxDb.Mm.mm10.Rmd’ using rmarkdown Quitting from EpiTxDb.Mm.mm10.Rmd:37-40 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! failed to load resource name: AH78918 title: EpiTxDb tRNAdb for Mus musculus mm10 reason: Corrupt Cache: resource id See AnnotationHub's TroubleshootingTheHubs vignette section on corrupt cache cache: /home/biocbuild/.cache/R/AnnotationHub reason: ℹ In argument: `rpath = unname(bfcrpath(x, rids = rids))`. Caused by error in `bfcrpath()`: ! all(rids %in% bfcrid(x)) is not TRUE --- Backtrace: ▆ 1. └─EpiTxDb.Mm.mm10::EpiTxDb.Mm.mm10.tRNAdb() 2. └─EpiTxDb.Mm.mm10:::.load_resource(version = version, type = "tRNAdb") 3. ├─ah[[id]] 4. └─ah[[id]] 5. └─AnnotationHub (local) .local(x, i, j = j, ...) 6. └─AnnotationHub:::.Hub_get1(...) 7. └─base::tryCatch(...) 8. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 9. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 10. └─value[[3L]](cond) 11. └─base::tryCatch(...) 12. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 13. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 14. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'EpiTxDb.Mm.mm10.Rmd' failed with diagnostics: failed to load resource name: AH78918 title: EpiTxDb tRNAdb for Mus musculus mm10 reason: Corrupt Cache: resource id See AnnotationHub's TroubleshootingTheHubs vignette section on corrupt cache cache: /home/biocbuild/.cache/R/AnnotationHub reason: ℹ In argument: `rpath = unname(bfcrpath(x, rids = rids))`. Caused by error in `bfcrpath()`: ! all(rids %in% bfcrid(x)) is not TRUE --- failed re-building ‘EpiTxDb.Mm.mm10.Rmd’ SUMMARY: processing the following file failed: ‘EpiTxDb.Mm.mm10.Rmd’ Error: Vignette re-building failed. Execution halted