############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data zFPKM ### ############################################################################## ############################################################################## * checking for file ‘zFPKM/DESCRIPTION’ ... OK * preparing ‘zFPKM’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘zFPKM.Rmd’ using rmarkdown trying URL 'ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94802/suppl/GSE94802_Minkina_etal_normalized_FPKM.csv.gz' Content type 'unknown' length 800733 bytes (781 KB) ================================================== trying URL 'ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94802/suppl/GSE94802_Minkina_etal_raw_counts.csv.gz' Content type 'unknown' length 574041 bytes (560 KB) ================================================== 2025-01-23 16:57:38.784 R[3746:366996107] XType: Using static font registry. Quitting from lines 108-122 [unnamed-chunk-5] (zFPKM.Rmd) Error: processing vignette 'zFPKM.Rmd' failed with diagnostics: there is no package called 'edgeR' --- failed re-building ‘zFPKM.Rmd’ SUMMARY: processing the following file failed: ‘zFPKM.Rmd’ Error: Vignette re-building failed. Execution halted