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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL wppi
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘wppi’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:27:53] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] Contains 1 files.
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:27:53] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:27:53] [TRACE]   [OmnipathR] Cache locked: FALSE
Note: wrong number of arguments to '/' 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2024-12-25 15:27:58] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-25 15:27:58] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:27:58] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-25 15:27:58] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-12-25 15:27:58] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-25 15:27:58] [TRACE]   [OmnipathR] Contains 1 files.
[2024-12-25 15:27:58] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-12-25 15:27:58] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-25 15:27:58] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:27:58] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-25 15:27:59] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-12-25 15:27:59] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-12-25 15:27:59] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:27:59] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-12-25 15:27:59] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:27:59] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-12-25 15:27:59] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:27:59] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-12-25 15:27:59] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:27:59] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:28:04] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] Contains 1 files.
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:28:04] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-25 15:28:04] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (wppi)