############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data waddR ### ############################################################################## ############################################################################## * checking for file ‘waddR/DESCRIPTION’ ... OK * preparing ‘waddR’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘waddR.Rmd’ using rmarkdown Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "waddR", and the latter is "The `waddR` package". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check. --- finished re-building ‘waddR.Rmd’ --- re-building ‘wasserstein_metric.Rmd’ using rmarkdown Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "wasserstein_metric", and the latter is "2-Wasserstein distance calculation". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check. --- finished re-building ‘wasserstein_metric.Rmd’ --- re-building ‘wasserstein_singlecell.Rmd’ using rmarkdown Quitting from lines 92-94 [unnamed-chunk-6] (wasserstein_singlecell.Rmd) Error: processing vignette 'wasserstein_singlecell.Rmd' failed with diagnostics: wrong args for environment subassignment --- failed re-building ‘wasserstein_singlecell.Rmd’ --- re-building ‘wasserstein_test.Rmd’ using rmarkdown Warning in file("", "w+b") : cannot open file '/tmp/RtmphWHfuW/Rf128c621406aa0': No such file or directory Quitting from lines 11-15 [unnamed-chunk-1] (wasserstein_test.Rmd) Error: processing vignette 'wasserstein_test.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘wasserstein_test.Rmd’ SUMMARY: processing the following files failed: ‘wasserstein_singlecell.Rmd’ ‘wasserstein_test.Rmd’ Error: Vignette re-building failed. Execution halted