############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data visiumStitched ### ############################################################################## ############################################################################## * checking for file ‘visiumStitched/DESCRIPTION’ ... OK * preparing ‘visiumStitched’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘misc.Rmd’ using rmarkdown Quitting from lines 52-62 [normalized_data_download] (misc.Rmd) Error: processing vignette 'misc.Rmd' failed with diagnostics: not all 'rnames' found or unique. --- failed re-building ‘misc.Rmd’ --- re-building ‘visiumStitched.Rmd’ using rmarkdown Quitting from lines 134-145 [spaceranger_dir] (visiumStitched.Rmd) Error: processing vignette 'visiumStitched.Rmd' failed with diagnostics: not all 'rnames' found or unique. --- failed re-building ‘visiumStitched.Rmd’ SUMMARY: processing the following files failed: ‘misc.Rmd’ ‘visiumStitched.Rmd’ Error: Vignette re-building failed. Execution halted