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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:sesame.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings sesame_1.25.3.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/sesame.Rcheck’
* using R Under development (unstable) (2025-01-22 r87618)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sesame/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sesame’ version ‘1.25.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sesame’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                user system elapsed
imputeBetasByGenomicNeighbors 36.092  1.349  37.549
inferSex                      24.153  1.404  25.632
sesameQC_calcStats            22.110  1.700  23.892
imputeBetas                   19.536  1.573  21.181
ELBAR                         16.775  3.333  20.278
sesameQC_plotHeatSNPs         18.471  1.592  20.197
diffRefSet                    15.982  0.667  16.712
inferSpecies                  15.088  0.695  15.841
sesameQC_plotBar              13.122  0.470  13.671
getRefSet                     12.788  0.549  13.383
sesameQC_plotBetaByDesign     10.642  1.650  12.366
compareMouseStrainReference   11.496  0.395  11.984
matchDesign                   11.144  0.734  11.925
compareReference              10.920  0.517  11.501
DML                            8.937  1.230  10.227
visualizeGene                  9.390  0.653  10.102
sdf_read_table                 8.954  0.405   9.430
inferTissue                    7.002  1.575   8.642
inferStrain                    7.821  0.646   8.490
estimateLeukocyte              7.412  0.604   8.057
DMR                            7.658  0.281   7.983
dyeBiasNL                      6.916  0.545   7.490
getMask                        6.663  0.539   7.255
deidentify                     6.726  0.390   7.145
dyeBiasCorrMostBalanced        6.571  0.288   6.889
openSesame                     5.640  0.867   6.576
createUCSCtrack                6.141  0.324   6.505
probeSuccessRate               5.493  0.434   5.965
reIdentify                     5.286  0.357   5.674
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK