############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scDiagnostics ### ############################################################################## ############################################################################## * checking for file ‘scDiagnostics/DESCRIPTION’ ... OK * preparing ‘scDiagnostics’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘AnnotationAnomalies.Rmd’ using rmarkdown Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH 2025-01-23 16:42:42.110 R[89364:366684502] XType: Using static font registry. Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH --- finished re-building ‘AnnotationAnomalies.Rmd’ --- re-building ‘DatasetMarkerGeneAlignment.Rmd’ using rmarkdown Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Quitting from lines 118-140 [unnamed-chunk-2] (DatasetMarkerGeneAlignment.Rmd) Error: processing vignette 'DatasetMarkerGeneAlignment.Rmd' failed with diagnostics: there is no package called 'scran' --- failed re-building ‘DatasetMarkerGeneAlignment.Rmd’ --- re-building ‘VisualizationTools.Rmd’ using rmarkdown Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH --- finished re-building ‘VisualizationTools.Rmd’ --- re-building ‘scDiagnostics.Rmd’ using rmarkdown Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : cannot find pngquant; please install and put it in PATH Quitting from lines 189-211 [unnamed-chunk-5] (scDiagnostics.Rmd) Error: processing vignette 'scDiagnostics.Rmd' failed with diagnostics: there is no package called 'scran' --- failed re-building ‘scDiagnostics.Rmd’ SUMMARY: processing the following files failed: ‘DatasetMarkerGeneAlignment.Rmd’ ‘scDiagnostics.Rmd’ Error: Vignette re-building failed. Execution halted