############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf ncdfFlow.buildbin-libdir && mkdir ncdfFlow.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=ncdfFlow.buildbin-libdir ncdfFlow_2.53.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'ncdfFlow' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 13.3.0' using C++11 g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/cpp11/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/BH/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rhdf5lib/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cpp11.cpp -o cpp11.o g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/cpp11/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/BH/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rhdf5lib/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hdfFlow.cpp -o hdfFlow.o hdfFlow.cpp: In function 'void readSlice_cpp(hid_t, hid_t, hid_t, std::vector, int, int, double*, bool)': hdfFlow.cpp:508:31: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 508 | if(sampleIndx >= nSample) | ~~~~~~~~~~~^~~~~~~~~~ hdfFlow.cpp:493:21: warning: variable 'status' set but not used [-Wunused-but-set-variable] 493 | herr_t status; | ^~~~~~ mkdir -p "E:/biocbuild/bbs-3.21-bioc/meat/ncdfFlow.buildbin-libdir/00LOCK-ncdfFlow/00new/ncdfFlow/lib/x64" ar rs "E:/biocbuild/bbs-3.21-bioc/meat/ncdfFlow.buildbin-libdir/00LOCK-ncdfFlow/00new/ncdfFlow/lib/x64/libncdfFlow.a" cpp11.o hdfFlow.o C:\rtools44\x86_64-w64-mingw32.static.posix\bin\ar.exe: creating E:/biocbuild/bbs-3.21-bioc/meat/ncdfFlow.buildbin-libdir/00LOCK-ncdfFlow/00new/ncdfFlow/lib/x64/libncdfFlow.a g++ -shared -s -static-libgcc -o ncdfFlow.dll tmp.def cpp11.o hdfFlow.o -LE:/biocbuild/bbs-3.21-bioc/R/library/Rhdf5lib/lib/x64-ucrt -lhdf5_cpp -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lsz -laec -lz -lpsapi -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR installing to E:/biocbuild/bbs-3.21-bioc/meat/ncdfFlow.buildbin-libdir/00LOCK-ncdfFlow/00new/ncdfFlow/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'ncdfFlow' as ncdfFlow_2.53.0.zip * DONE (ncdfFlow)