############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ncdfFlow ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘ncdfFlow’ ... ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using C++11 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rhdf5lib/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c cpp11.cpp -o cpp11.o In file included from cpp11.cpp:5: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/cpp11/include/cpp11/declarations.hpp:13: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/cpp11/include/cpp11.hpp:3: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/cpp11/include/cpp11/R.hpp:11:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] #define R_NO_REMAP ^ :2:9: note: previous definition is here #define R_NO_REMAP 1 ^ 1 warning generated. clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rhdf5lib/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c hdfFlow.cpp -o hdfFlow.o In file included from hdfFlow.cpp:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/cpp11/include/cpp11.hpp:3: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/cpp11/include/cpp11/R.hpp:11:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] #define R_NO_REMAP ^ :2:9: note: previous definition is here #define R_NO_REMAP 1 ^ hdfFlow.cpp:493:14: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^ 2 warnings generated. mkdir -p "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-ncdfFlow/00new/ncdfFlow/lib" ar rs "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-ncdfFlow/00new/ncdfFlow/lib/libncdfFlow.a" cpp11.o hdfFlow.o ar: creating archive /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-ncdfFlow/00new/ncdfFlow/lib/libncdfFlow.a clang++ -arch x86_64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o ncdfFlow.so cpp11.o hdfFlow.o /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rhdf5lib/lib/libhdf5_cpp.a /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rhdf5lib/lib/libhdf5.a -L/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rhdf5lib/lib -lcrypto -lcurl -lsz -laec -lz -ldl -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-ncdfFlow/00new/ncdfFlow/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ncdfFlow)