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### Running command:
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###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:moanin.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings moanin_1.15.0.tar.gz
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* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/moanin.Rcheck'
* using R Under development (unstable) (2024-10-26 r87273 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'moanin/DESCRIPTION' ... OK
* this is package 'moanin' version '1.15.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'moanin' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) DE_timepoints.Rd:129-130: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DE_timepoints.Rd:131-132: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DE_timepoints.Rd:133-136: Lost braces in \itemize; meant \describe ?
checkRd: (-1) estimate_log_fold_change.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) estimate_log_fold_change.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) estimate_log_fold_change.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) estimate_log_fold_change.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) estimate_log_fold_change.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) estimate_log_fold_change.Rd:45-46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) estimate_log_fold_change.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) splines_kmeans.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) splines_kmeans.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) splines_kmeans.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) splines_kmeans_score_and_label.Rd:69-71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) splines_kmeans_score_and_label.Rd:72-73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) splines_kmeans_score_and_label.Rd:74-75: Lost braces in \itemize; \value handles \item{}{} directly
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Moanin-class.Rd: SummarizedExperiment
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Unknown package 'KEGGprofile' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
get_auc_similarity_scores 72.77   2.04   74.88
find_enriched_go_terms     8.76   0.17    8.93
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'E:/biocbuild/bbs-3.21-bioc/meat/moanin.Rcheck/00check.log'
for details.