##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL microRNA
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’
* installing *source* package ‘microRNA’ ...
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp: In function ‘SEXPREC* longest_common_substring(SEXP)’:
longest_common_substring.cpp:55:15: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
   55 |         if (i == len[index] - 1) { // ignore null termination character
      |             ~~^~~~~~~~~~~~~~~~~
longest_common_substring.cpp:87:35: error: ‘mkCharLen’ was not declared in this scope; did you mean ‘Rf_mkCharLen’?
   87 |         SET_STRING_ELT(result, i, mkCharLen(found[i], lcs_len));
      |                                   ^~~~~~~~~
      |                                   Rf_mkCharLen
make: *** [/home/biocbuild/R/R/etc/Makeconf:204: longest_common_substring.o] Error 1
ERROR: compilation failed for package ‘microRNA’
* removing ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/microRNA’