############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:ldblock.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings ldblock_1.37.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/ldblock.Rcheck’ * using R Under development (unstable) (2024-11-24 r87369) * using platform: aarch64-unknown-linux-gnu * R was compiled by aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: openEuler 24.03 (LTS) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ldblock/DESCRIPTION’ ... OK * this is package ‘ldblock’ version ‘1.37.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ldblock’ can be installed ... OK * checking installed package size ... INFO installed size is 40.4Mb sub-directories of 1Mb or more: hapmap 39.9Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: 'rlang' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) ldblock-package.Rd:7: Lost braces 7 | \title{c("\\Sexpr[results=rd,stage=build]{tools:::Rd_package_title(\"#1\")}", | ^ checkRd: (-1) ldblock-package.Rd:10: Lost braces 10 | c("\\Sexpr[results=rd,stage=build]{tools:::Rd_package_description(\"#1\")}", | ^ checkRd: (-1) ldblock-package.Rd:15: Lost braces 15 | c("\\Sexpr[results=rd,stage=build]{tools:::Rd_package_DESCRIPTION(\"#1\")}", | ^ checkRd: (-1) ldblock-package.Rd:17: Lost braces 17 | c("\\Sexpr[results=rd,stage=build]{tools:::Rd_package_indices(\"#1\")}", | ^ checkRd: (-1) ldblock-package.Rd:26: Lost braces 26 | c("\\Sexpr[results=rd,stage=build]{tools:::Rd_package_author(\"#1\")}", | ^ checkRd: (-1) ldblock-package.Rd:30: Lost braces 30 | c("\\Sexpr[results=rd,stage=build]{tools:::Rd_package_maintainer(\"#1\")}", | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed expandSnpSet 25.956 0.444 26.518 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘ldblock_unit_tests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.21-bioc/meat/ldblock.Rcheck/00check.log’ for details.