##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ggcyto
###
##############################################################################
##############################################################################


* checking for file ‘ggcyto/DESCRIPTION’ ... OK
* preparing ‘ggcyto’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘Top_features_of_ggcyto.Rmd’ using rmarkdown
2025-05-29 16:54:34.073 R[61491:130060956] XType: com.apple.fonts is not accessible.
2025-05-29 16:54:34.073 R[61491:130060956] XType: XTFontStaticRegistry is enabled.

Quitting from Top_features_of_ggcyto.Rmd:99-115 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'openCyto'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Top_features_of_ggcyto.Rmd' failed with diagnostics:
there is no package called 'openCyto'
--- failed re-building ‘Top_features_of_ggcyto.Rmd’

--- re-building ‘autoplot.Rmd’ using rmarkdown
--- finished re-building ‘autoplot.Rmd’

--- re-building ‘ggcyto.GatingSet.Rmd’ using rmarkdown
--- finished re-building ‘ggcyto.GatingSet.Rmd’

--- re-building ‘ggcyto.flowSet.Rmd’ using rmarkdown

Quitting from ggcyto.flowSet.Rmd:138-141 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'openCyto'
---
Backtrace:
    ▆
 1. ├─flowCore::fsApply(...)
 2. ├─flowCore::fsApply(...)
 3. │ └─base::match.fun(FUN)
 4. └─base::loadNamespace(x)
 5.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 6.     └─base (local) withOneRestart(expr, restarts[[1L]])
 7.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ggcyto.flowSet.Rmd' failed with diagnostics:
there is no package called 'openCyto'
--- failed re-building ‘ggcyto.flowSet.Rmd’

SUMMARY: processing the following files failed:
  ‘Top_features_of_ggcyto.Rmd’ ‘ggcyto.flowSet.Rmd’

Error: Vignette re-building failed.
Execution halted