############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data derfinder ### ############################################################################## ############################################################################## * checking for file ‘derfinder/DESCRIPTION’ ... OK * preparing ‘derfinder’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘derfinder-quickstart.Rmd’ using rmarkdown Quitting from lines 343-378 (derfinder-quickstart.Rmd) Error: processing vignette 'derfinder-quickstart.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘derfinder-quickstart.Rmd’ --- re-building ‘derfinder-users-guide.Rmd’ using rmarkdown Warning in in_dir(input_dir(), expr) : You changed the working directory to /tmp/RtmpmoXEO7/Rbuild3e5d99623e38d7/derfinder/vignettes/analysisResults (probably via setwd()). It will be restored to /tmp/RtmpmoXEO7/Rbuild3e5d99623e38d7/derfinder/vignettes. See the Note section in ?knitr::knit Quitting from lines 1341-1459 (derfinder-users-guide.Rmd) Error: processing vignette 'derfinder-users-guide.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘derfinder-users-guide.Rmd’ SUMMARY: processing the following files failed: ‘derfinder-quickstart.Rmd’ ‘derfinder-users-guide.Rmd’ Error: Vignette re-building failed. Execution halted