############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data crlmm ### ############################################################################## ############################################################################## * checking for file ‘crlmm/DESCRIPTION’ ... OK * preparing ‘crlmm’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘crlmm’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c gtypeCaller.c -o gtypeCaller.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c init.c -o init.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c trimmed.c -o trimmed.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c utils.c -o utils.o utils.c: In function ‘trimmed_mean’: utils.c:56:18: warning: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration] 56 | double *buffer=Calloc(n, double); | ^~~~~~ | calloc utils.c:56:28: error: expected expression before ‘double’ 56 | double *buffer=Calloc(n, double); | ^~~~~~ utils.c:77:3: warning: implicit declaration of function ‘Free’; did you mean ‘free’? [-Wimplicit-function-declaration] 77 | Free(buffer); | ^~~~ | free utils.c: In function ‘trimmed_stats’: utils.c:82:30: error: expected expression before ‘double’ 82 | double *datvec=Calloc(cols,double); | ^~~~~~ utils.c:83:29: error: expected expression before ‘int’ 83 | int *classvec=Calloc(cols,int); | ^~~ utils.c: In function ‘median’: utils.c:119:34: error: expected expression before ‘double’ 119 | double *buffer = Calloc(length,double); | ^~~~~~ utils.c: In function ‘mad_median’: utils.c:141:28: error: expected expression before ‘double’ 141 | double *buffer=Calloc(n, double); | ^~~~~~ utils.c: In function ‘mad_stats’: utils.c:208:30: error: expected expression before ‘double’ 208 | double *datvec=Calloc(cols,double); | ^~~~~~ utils.c:209:29: error: expected expression before ‘int’ 209 | int *classvec=Calloc(cols,int); | ^~~ make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:195: utils.o] Error 1 ERROR: compilation failed for package ‘crlmm’ * removing ‘/tmp/RtmpDtNR8o/Rinst390b61492952c/crlmm’ ----------------------------------- ERROR: package installation failed