############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL cn.mops ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'cn.mops' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.3.0' using C++ compiler: 'G__~1.EXE (GCC) 13.3.0' gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_init_cnmops.c -o R_init_cnmops.o g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cnmops.cpp -o cnmops.o g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c segment.cpp -o segment.o segment.cpp: In function 'SEXPREC* segment(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': segment.cpp:59:27: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable] 59 | double globalMean,globalSd,diff,M2,globalVariance; | ^~~~~~~~ segment.cpp:60:16: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable] 60 | double oldStatistic, meanLeft,meanRight,varLeft,varRight; | ^~~~~~~~~~~~ segment.cpp:61:38: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable] 61 | double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1; | ^~~~~~~~~~~~ segment.cpp:62:47: warning: variable 'maxIdx' set but not used [-Wunused-but-set-variable] 62 | double newPValue, maxPValue,oldPValue,maxIdx; | ^~~~~~ In file included from segment.cpp:10: E:/biocbuild/bbs-3.21-bioc/R/include/Rmath.h:212:25: warning: unused variable 'Rf_beta' [-Wunused-variable] 212 | #define beta Rf_beta | ^~~~~~~ segment.cpp:64:16: note: in expansion of macro 'beta' 64 | double beta,nn; | ^~~~ g++ -std=gnu++17 -shared -s -static-libgcc -o cn.mops.dll tmp.def R_init_cnmops.o cnmops.o segment.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR installing to E:/biocbuild/bbs-3.21-bioc/R/library/00LOCK-cn.mops/00new/cn.mops/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cn.mops)