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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cn.mops
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* checking for file ‘cn.mops/DESCRIPTION’ ... OK
* preparing ‘cn.mops’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘cn.mops’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DSTRICT_R_HEADERS=1  -fpic  -g -O2  -Wall -c R_init_cnmops.c -o R_init_cnmops.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DSTRICT_R_HEADERS=1  -fpic  -g -O2  -Wall -DR_NO_REMAP -c cnmops.cpp -o cnmops.o
cnmops.cpp: In function ‘SEXPREC* cnmops(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
cnmops.cpp:18:17: error: ‘length’ was not declared in this scope
   18 |         int N = length(xS);
      |                 ^~~~~~
cnmops.cpp:30:30: error: expected primary-expression before ‘double’
   30 |         double *lg=Calloc(N, double);
      |                              ^~~~~~
cnmops.cpp:30:20: error: ‘Calloc’ was not declared in this scope; did you mean ‘calloc’?
   30 |         double *lg=Calloc(N, double);
      |                    ^~~~~~
      |                    calloc
In file included from cnmops.cpp:8:
cnmops.cpp:42:32: error: ‘allocMatrix’ was not declared in this scope; did you mean ‘Rf_allocMatrix’?
   42 |         PROTECT(alpha_ik_RET = allocMatrix(REALSXP, n, N));
      |                                ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
cnmops.cpp:46:31: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
   46 |         PROTECT(alpha_i_RET = allocVector(REALSXP, n));
      |                               ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
cnmops.cpp:113:9: error: ‘Free’ was not declared in this scope; did you mean ‘free’?
  113 |         Free(lg);
      |         ^~~~
      |         free
cnmops.cpp:117:37: error: ‘mkChar’ was not declared in this scope
  117 |         SET_STRING_ELT(namesRET, 0, mkChar("alpha.ik"));
      |                                     ^~~~~~
cnmops.cpp:128:9: error: ‘setAttrib’ was not declared in this scope; did you mean ‘Rf_setAttrib’?
  128 |         setAttrib(RET, R_NamesSymbol, namesRET);
      |         ^~~~~~~~~
      |         Rf_setAttrib
make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:202: cnmops.o] Error 1
ERROR: compilation failed for package ‘cn.mops’
* removing ‘/tmp/Rtmpx4jeQp/Rinst411b1832629a/cn.mops’
      -----------------------------------
ERROR: package installation failed