############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf cn.farms.buildbin-libdir && mkdir cn.farms.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=cn.farms.buildbin-libdir cn.farms_1.55.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'cn.farms' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.3.0' using C++ compiler: 'G__~1.EXE (GCC) 13.3.0' gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_init_cnfarms.c -o R_init_cnfarms.o g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c laplace.cpp -o laplace.o laplace.cpp: In function 'SEXPREC* momentsGauss(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': laplace.cpp:442:13: warning: unused variable 'method' [-Wunused-variable] 442 | int method=0; | ^~~~~~ laplace.cpp: In function 'void computeParameters(double, double, double, double, double, double, int&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&)': laplace.cpp:364:42: warning: 'I1left' may be used uninitialized [-Wmaybe-uninitialized] 364 | double I2left=(-leftMy/leftSigma)*I1left+I0left; | ~~~~~~~~~~~~~~~~~~~^~~~~~~ laplace.cpp:198:16: note: 'I1left' was declared here 198 | double I1left; | ^~~~~~ laplace.cpp:368:63: warning: 'I1right' may be used uninitialized [-Wmaybe-uninitialized] 368 | double rightMoment1=1.0*rightMy*I0right+1.0*rightSigma*I1right; | ~~~~~~~~~~~~~~^~~~~~~~ laplace.cpp:199:16: note: 'I1right' was declared here 199 | double I1right; | ^~~~~~~ gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sparse_farms.c -o sparse_farms.o g++ -std=gnu++17 -shared -s -static-libgcc -o cn.farms.dll tmp.def R_init_cnfarms.o laplace.o sparse_farms.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR installing to E:/biocbuild/bbs-3.21-bioc/meat/cn.farms.buildbin-libdir/00LOCK-cn.farms/00new/cn.farms/libs/x64 ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'cn.farms' as cn.farms_1.55.0.zip * DONE (cn.farms)