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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:alabaster.string.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings alabaster.string_1.7.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/alabaster.string.Rcheck’
* using R Under development (unstable) (2024-11-24 r87369)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘alabaster.string/DESCRIPTION’ ... OK
* this is package ‘alabaster.string’ version ‘1.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘alabaster.string’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  readXStringSet.Rd: XStringSet-class, readObject, saveObject,
    readObjectFile, altReadObject, QualityScaledDNAStringSet-class
  saveXStringSet.Rd: XStringSet-class, QualityScaledXStringSet-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
       ▆
    1. ├─alabaster.base::stageObject(astuff, tmp, path = "sequence_thing") at test-XStringSet.R:114:5
    2. ├─alabaster.string::stageObject(astuff, tmp, path = "sequence_thing")
    3. │ └─alabaster.base::.writeMetadata(meta, dir = dir)
    4. │   └─alabaster.base::writeMetadata(...)
    5. │     └─jsonvalidate::json_validate(...)
    6. │       └─jsonvalidate::json_validator(...)
    7. │         └─jsonvalidate:::jsonvalidate_js()
    8. └─base::loadNamespace(x)
    9.   └─base::library.dynam(lib, package, package.lib)
   10.     └─base::dyn.load(file, DLLpath = DLLpath, ...)
  
  [ FAIL 8 | WARN 0 | SKIP 0 | PASS 1 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/alabaster.string.Rcheck/00check.log’
for details.