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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:alabaster.spatial.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings alabaster.spatial_1.7.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/alabaster.spatial.Rcheck’
* using R Under development (unstable) (2024-11-24 r87369)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘alabaster.spatial/DESCRIPTION’ ... OK
* this is package ‘alabaster.spatial’ version ‘1.7.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘alabaster.spatial’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  loadSpatialImage.Rd: SpatialImage-class
  readSpatialExperiment.Rd: SpatialExperiment-class, saveObject,
    readObjectFile, readSingleCellExperiment, altReadObject
  saveSpatialExperiment.Rd: SpatialExperiment-class, imgData
  stageSpatialImage.Rd: SpatialImage-class, RemoteSpatialImage-class,
    StoredSpatialImage-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
    5.     └─alabaster.sce (local) .local(x, dir, path, child, ...)
    6.       ├─methods::callNextMethod()
    7.       └─alabaster.se (local) .nextMethod(x = x, dir = dir, path = path)
    8.         └─alabaster.se (local) .local(x, dir, path, child, ...)
    9.           ├─methods::callNextMethod()
   10.           └─alabaster.se (local) .nextMethod(x = x, dir = dir, path = path)
   11.             └─alabaster.se (local) .local(x, dir, path, child, ...)
   12.               └─base::tryCatch(...)
   13.                 └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   14.                   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   15.                     └─value[[3L]](cond)
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 16 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/alabaster.spatial.Rcheck/00check.log’
for details.