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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:alabaster.mae.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings alabaster.mae_1.7.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/alabaster.mae.Rcheck’
* using R Under development (unstable) (2024-11-24 r87369)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘alabaster.mae/DESCRIPTION’ ... OK
* this is package ‘alabaster.mae’ version ‘1.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘alabaster.mae’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  readMultiAssayExperiment.Rd: MultiAssayExperiment-class, readObject,
    stageObject, readObjectFile, altReadObject
  saveMultiAssayExperiment.Rd: MultiAssayExperiment-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘alabaster.mae-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: readMultiAssayExperiment
> ### Title: Read a MultiAssayExperiment from disk
> ### Aliases: readMultiAssayExperiment loadMultiAssayExperiment
> 
> ### ** Examples
> 
> library(SummarizedExperiment)
> 
> # Mocking up an MAE
> mat <- matrix(rnorm(1000), ncol=10)
> colnames(mat) <- letters[1:10]
> rownames(mat) <- sprintf("GENE_%i", seq_len(nrow(mat)))
> se <- SummarizedExperiment(list(counts=mat))
> 
> library(MultiAssayExperiment)
> mae <- MultiAssayExperiment(list(gene=se))
> 
> # Staging it:
> tmp <- tempfile()
> dir.create(tmp)
> info <- stageObject(mae, tmp, "dataset")
Error in value[[3L]](cond) : 
  failed to stage 'sampleMap(<MultiAssayExperiment>)'
  - unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
  libnode.so.72: cannot open shared object file: No such file or directory
Calls: stageObject ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
    - unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/V8/libs/V8.so':
    libnode.so.72: cannot open shared object file: No such file or directory
  Backtrace:
      ▆
   1. ├─alabaster.base::stageObject(mae, temp, "whee") at test-stage-mae.R:142:5
   2. └─alabaster.mae::stageObject(mae, temp, "whee")
   3.   └─alabaster.mae (local) .local(x, dir, path, child, ...)
   4.     └─base::tryCatch(...)
   5.       └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   6.         └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   7.           └─value[[3L]](cond)
  
  [ FAIL 7 | WARN 0 | SKIP 0 | PASS 11 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/alabaster.mae.Rcheck/00check.log’
for details.