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### Running command:
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###   chmod a+r TRONCO -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TRONCO
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* checking for file 'TRONCO/DESCRIPTION' ... OK
* preparing 'TRONCO':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'f1_introduction.rmd' using rmarkdown
--- finished re-building 'f1_introduction.rmd'

--- re-building 'f2_loading_data.Rmd' using rmarkdown
--- finished re-building 'f2_loading_data.Rmd'

--- re-building 'f3_data_visualization.Rmd' using rmarkdown
--- finished re-building 'f3_data_visualization.Rmd'

--- re-building 'f4_data_manipulation.Rmd' using rmarkdown
--- finished re-building 'f4_data_manipulation.Rmd'

--- re-building 'f5_model_inference.Rmd' using rmarkdown
--- finished re-building 'f5_model_inference.Rmd'

--- re-building 'f6_post_reconstruction.Rmd' using rmarkdown

Quitting from lines 169-171 [unnamed-chunk-11] (f6_post_reconstruction.Rmd)
Error: processing vignette 'f6_post_reconstruction.Rmd' failed with diagnostics:
creation of server socket failed: port 11678 cannot be opened
--- failed re-building 'f6_post_reconstruction.Rmd'

--- re-building 'f7_import_export.Rmd' using rmarkdown
--- finished re-building 'f7_import_export.Rmd'

SUMMARY: processing the following file failed:
  'f6_post_reconstruction.Rmd'

Error: Vignette re-building failed.
Execution halted