Back to Multiple platform build/check report for BioC 3.21:   simplified   long
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This page was generated on 2024-11-28 12:14 -0500 (Thu, 28 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4748
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4459
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4398
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

All results for package ShortRead


To the developers/maintainers of the ShortRead package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ShortRead.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Package 1931/2272HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ShortRead 1.65.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2024-11-27 13:40 -0500 (Wed, 27 Nov 2024)
git_url: https://git.bioconductor.org/packages/ShortRead
git_branch: devel
git_last_commit: ad4e1df
git_last_commit_date: 2024-10-29 09:29:09 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published


Results for Bioconductor software packages that depend directly on package ShortRead

QUICK STATSOS / ArchINSTALLBUILDCHECKBUILD BIN
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64
0127
0127
11520
palomino7Windows Server 2022 Datacenter / x64
0324
0324
00618
0024
lconwaymacOS 12.7.1 Monterey / x86_64
0126
0126
01520
0026
Package 1/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
amplican 1.29.0  (landing page)
Eivind Valen
git_last_commit: 555fe1e
git_last_commit_date: 2024-10-29 10:22:13 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 2/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
basecallQC 1.31.0  (landing page)
Thomas Carroll
git_last_commit: 0ca2dc6
git_last_commit_date: 2024-10-29 10:18:46 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 3/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BEAT 1.45.0  (landing page)
Kemal Akman
git_last_commit: 72f59ed
git_last_commit_date: 2024-10-29 09:49:50 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 4/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellBarcode 1.13.0  (landing page)
Wenjie Sun
git_last_commit: 3fa7ed0
git_last_commit_date: 2024-10-29 11:06:31 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 5/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chipseq 1.57.0  (landing page)
Bioconductor Package Maintainer
git_last_commit: 205b179
git_last_commit_date: 2024-10-29 09:31:39 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
Package 6/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPseqR 1.61.0  (landing page)
Peter Humburg
git_last_commit: 87a6195
git_last_commit_date: 2024-10-29 09:32:34 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 7/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPsim 1.61.0  (landing page)
Peter Humburg
git_last_commit: 267ec77
git_last_commit_date: 2024-10-29 09:32:07 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 8/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CircSeqAlignTk 1.9.0  (landing page)
Jianqiang Sun
git_last_commit: c5921ae
git_last_commit_date: 2024-10-29 11:14:51 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 9/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
dada2 1.35.0  (landing page)
Benjamin Callahan
git_last_commit: 3d68997
git_last_commit_date: 2024-10-29 10:07:42 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
Package 10/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
easyRNASeq 2.43.0  (landing page)
Nicolas Delhomme
git_last_commit: d32c68e
git_last_commit_date: 2024-10-29 09:39:50 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    ERROR  
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    ERROR    OK  
Package 11/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EDASeq 2.41.0  (landing page)
Davide Risso
git_last_commit: 68d2eba
git_last_commit_date: 2024-10-29 09:38:27 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 12/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
esATAC 1.29.0  (landing page)
Zheng Wei
git_last_commit: 508f345
git_last_commit_date: 2024-10-29 10:24:06 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'rtracklayer' which is only available as a source package that needs compilation
Package 13/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FastqCleaner 1.25.0  (landing page)
Leandro Roser
git_last_commit: 2a95050
git_last_commit_date: 2024-10-29 10:29:02 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 14/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
girafe 1.59.1  (landing page)
J. Toedling
git_last_commit: 8e02237
git_last_commit_date: 2024-11-25 08:01:14 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR    ERROR  skippedskipped
Package 15/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GOTHiC 1.43.0  (landing page)
Borbala Mifsud
git_last_commit: fdd7c2b
git_last_commit_date: 2024-10-29 10:38:22 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'rtracklayer' which is only available as a source package that needs compilation
Package 16/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HTSeqGenie 4.37.0  (landing page)
Jens Reeder
git_last_commit: 721d51c
git_last_commit_date: 2024-10-29 09:43:08 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    TIMEOUT  
palomino7Windows Server 2022 Datacenter / x64... NOT SUPPORTED ...
lconwaymacOS 12.7.1 Monterey / x86_64... NOT SUPPORTED ...
Package 17/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
icetea 1.25.0  (landing page)
Vivek Bhardwaj
git_last_commit: 795af55
git_last_commit_date: 2024-10-29 10:29:24 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'DESeq2' which is only available as a source package that needs compilation
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  NO, package depends on 'rtracklayer' which is only available as a source package that needs compilation
Package 18/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IONiseR 2.31.0  (landing page)
Mike Smith
git_last_commit: 5d8cf1e
git_last_commit_date: 2024-10-29 10:02:02 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 19/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nucleR 2.39.0  (landing page)
Alba Sala
git_last_commit: 242e3bb
git_last_commit_date: 2024-10-29 09:37:44 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
Package 20/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OTUbase 1.57.0  (landing page)
Daniel Beck
git_last_commit: 4de6774
git_last_commit_date: 2024-10-29 09:34:46 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 21/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QuasR 1.47.0  (landing page)
Michael Stadler
git_last_commit: ec125bb
git_last_commit_date: 2024-10-29 09:44:04 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  NO, package depends on 'rtracklayer' which is only available as a source package that needs compilation
Package 22/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
R453Plus1Toolbox 1.57.0  (landing page)
Hans-Ulrich Klein
git_last_commit: 8d481bd
git_last_commit_date: 2024-10-29 09:35:04 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'VariantAnnotation' which is only available as a source package that needs compilation
Package 23/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rqc 1.41.0  (landing page)
Welliton Souza
git_last_commit: beb1258
git_last_commit_date: 2024-10-29 09:56:33 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'biovizBase' which is only available as a source package that needs compilation
Package 24/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RSVSim 1.47.0  (landing page)
Christoph Bartenhagen
git_last_commit: ad6b2ec
git_last_commit_date: 2024-10-29 09:43:56 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 25/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scruff 1.25.0  (landing page)
Zhe Wang
git_last_commit: 21462a6
git_last_commit_date: 2024-10-29 10:30:01 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'rtracklayer' which is only available as a source package that needs compilation
Package 26/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
segmentSeq 2.41.1  (landing page)
Samuel Granjeaud
git_last_commit: ce8078c
git_last_commit_date: 2024-11-04 18:10:22 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 27/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
systemPipeR 2.13.0  (landing page)
Thomas Girke
git_last_commit: 94357f2
git_last_commit_date: 2024-10-29 09:54:41 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 28/28HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
UMI4Cats 1.17.0  (landing page)
Mireia Ramos-Rodriguez
git_last_commit: 7016307
git_last_commit_date: 2024-10-29 10:49:18 -0500
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'DESeq2' which is only available as a source package that needs compilation