Back to Multiple platform build/check report for BioC 3.22:   simplified   long
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This page was generated on 2025-10-30 12:34 -0400 (Thu, 30 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4901
lconwaymacOS 12.7.6 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4691
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4637
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

All results for package ShortRead


To the developers/maintainers of the ShortRead package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ShortRead.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Package 2005/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ShortRead 1.68.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2025-10-29 19:52 -0400 (Wed, 29 Oct 2025)
git_url: https://git.bioconductor.org/packages/ShortRead
git_branch: RELEASE_3_22
git_last_commit: df90c87
git_last_commit_date: 2025-10-29 10:00:34 -0400 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published


Results for Bioconductor software packages that depend directly on package ShortRead

QUICK STATSOS / ArchINSTALLBUILDCHECKBUILD BIN
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64
0126
0225
00619
lconwaymacOS 12.7.6 Monterey / x86_64
0126
0225
00619
0025
kjohnson3macOS 13.7.7 Ventura / arm64
0126
0225
00619
0025
Package 1/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
amplican 1.32.0  (landing page)
Eivind Valen
git_last_commit: 631c17a
git_last_commit_date: 2025-10-29 10:40:44 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped
lconwaymacOS 12.7.6 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped
Package 2/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
basecallQC 1.34.0  (landing page)
Thomas Carroll
git_last_commit: 7d04b5c
git_last_commit_date: 2025-10-29 10:38:02 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 3/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BEAT 1.48.0  (landing page)
Kemal Akman
git_last_commit: 6d10f1c
git_last_commit_date: 2025-10-29 10:17:47 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 4/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellBarcode 1.16.0  (landing page)
Wenjie Sun
git_last_commit: 5db08a9
git_last_commit_date: 2025-10-29 11:13:43 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 5/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chipseq 1.60.0  (landing page)
Bioconductor Package Maintainer
git_last_commit: 1be0c9c
git_last_commit_date: 2025-10-29 10:02:59 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
Package 6/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPseqR 1.64.0  (landing page)
Peter Humburg
git_last_commit: 544d5eb
git_last_commit_date: 2025-10-29 10:03:52 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 7/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPsim 1.64.0  (landing page)
Peter Humburg
git_last_commit: 4288ced
git_last_commit_date: 2025-10-29 10:03:24 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 8/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CircSeqAlignTk 1.12.0  (landing page)
Jianqiang Sun
git_last_commit: d5a1377
git_last_commit_date: 2025-10-29 11:19:05 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 9/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
dada2 1.38.0  (landing page)
Benjamin Callahan
git_last_commit: 60234dd
git_last_commit_date: 2025-10-29 10:30:17 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
Package 10/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
easyRNASeq 2.46.0  (landing page)
Nicolas Delhomme
git_last_commit: e268573
git_last_commit_date: 2025-10-29 10:10:00 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
Package 11/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EDASeq 2.44.0  (landing page)
Davide Risso
git_last_commit: e7a4a13
git_last_commit_date: 2025-10-29 10:08:53 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 12/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
esATAC 1.32.0  (landing page)
Zheng Wei
git_last_commit: 6d7ce39
git_last_commit_date: 2025-10-29 10:42:12 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 13/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FastqCleaner 1.28.0  (landing page)
Leandro Roser
git_last_commit: 112c07e
git_last_commit_date: 2025-10-29 10:45:40 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 14/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FLAMES 2.4.0  (landing page)
Changqing Wang
git_last_commit: 3a128b2
git_last_commit_date: 2025-10-29 11:10:46 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 15/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GOTHiC 1.46.0  (landing page)
Borbala Mifsud
git_last_commit: 9a54459
git_last_commit_date: 2025-10-29 10:52:56 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 16/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
icetea 1.28.0  (landing page)
Vivek Bhardwaj
git_last_commit: f7f280d
git_last_commit_date: 2025-10-29 10:45:57 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
Package 17/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IONiseR 2.34.0  (landing page)
Mike Smith
git_last_commit: 25723cd
git_last_commit_date: 2025-10-29 10:26:28 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 18/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nucleR 2.42.0  (landing page)
Alba Sala
git_last_commit: 90978c6
git_last_commit_date: 2025-10-29 10:08:16 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
Package 19/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OTUbase 1.60.0  (landing page)
Daniel Beck
git_last_commit: 5c945e4
git_last_commit_date: 2025-10-29 10:05:45 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 20/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QuasR 1.50.0  (landing page)
Michael Stadler
git_last_commit: 3274f2d
git_last_commit_date: 2025-10-29 10:13:16 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
Package 21/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
R453Plus1Toolbox 1.60.0  (landing page)
Hans-Ulrich Klein
git_last_commit: d4c9421
git_last_commit_date: 2025-10-29 10:06:02 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
lconwaymacOS 12.7.6 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
Package 22/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rqc 1.44.0  (landing page)
Welliton Souza
git_last_commit: e28c456
git_last_commit_date: 2025-10-29 10:22:46 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 23/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RSVSim 1.50.0  (landing page)
Christoph Bartenhagen
git_last_commit: 9b0b148
git_last_commit_date: 2025-10-29 10:13:10 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 24/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scruff 1.28.0  (landing page)
Zhe Wang
git_last_commit: 085152e
git_last_commit_date: 2025-10-29 10:46:27 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 25/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
segmentSeq 2.44.0  (landing page)
Samuel Granjeaud
git_last_commit: cab2d96
git_last_commit_date: 2025-10-29 10:04:32 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 26/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
systemPipeR 2.16.0  (landing page)
Thomas Girke
git_last_commit: 4c55692
git_last_commit_date: 2025-10-29 10:21:27 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
Package 27/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
UMI4Cats 1.20.0  (landing page)
Mireia Ramos-Rodriguez
git_last_commit: ddc6b2d
git_last_commit_date: 2025-10-29 11:01:19 -0400
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published